List of datasets

Extract numeric data from the datasets

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List of datasets on aug3.g4322
Dataset
ID
Accession/
Depository
File name (data table)Access to dataSample/
Stage
Experiment/
Method
GeneKeys
DS0001 GSE112712
GEO
GSE112712_devRNAseq_aug3_RPKM.txt Extract
numeric data
staged embryos
st_1_2_3_4_5_6_7_8_10
Developmental series
RNAseq
DS0002 GSE136357
GEO
GSE136357_HTseq_count_per_gene_aug3_RPKM.txt Extract
numeric data
untreated vs treated
st_3_5_6_7
Identification of DEGs
pRNAi_RNAseq
hedgehog/patched/msx1|msh
DS0003 GSE136357
GEO
GSE136357_DEG_hh_st3.txt Extract
numeric data
hh pRNAi embryos
st_3
Identification of DEGs
pRNAi_RNAseq
hedgehog
DS0004 GSE136357
GEO
GSE136357_DEG_hh_st5.txt Extract
numeric data
hh pRNAi embryos
st_5
Identification of DEGs
pRNAi_RNAseq
hedgehog
DS0005 GSE136357
GEO
GSE136357_DEG_ptc_st3.txt Extract
numeric data
ptc pRNAi embryos
st_3
Identification of DEGs
pRNAi_RNAseq
patched
DS0006 GSE136357
GEO
GSE136357_DEG_ptc_st5.txt Extract
numeric data
ptc pRNAi embryos
st_5
Identification of DEGs
pRNAi_RNAseq
patched
DS0007 GSE136357
GEO
GSE136357_DEG_msx_st5.txt Extract
numeric data
msx1 pRNAi embryos
st_5
Identification of DEGs
pRNAi_RNAseq
msx1|msh
DS0008 GSE136357
GEO
GSE136357_DEG_msx_st6.txt Extract
numeric data
msx1 pRNAi embryos
st_6
Identification of DEGs
pRNAi_RNAseq
msx1|msh
DS0009 LAB01
LAB01_HTseq_count_per_gene_aug3_RPKM.txt Extract
numeric data
regions of germ disc
st_3_4_5
Identification of DEGs
Cell_isolation_RNAseq
DS0010 LAB02
LAB02_HTseq_count_per_gene_aug3_RPKM.txt Extract
numeric data
fuchinashi pRNAi embryos
st_2_3_5
Identification of DEGs
pRNAi_RNAseq
fuchinashi
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Last updated by hiroki oda, 2020.5.31