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Table
ID
Reference/
Journal
Folder/File name (data table)/
Table title
DisplayDownloadSample/
Stage
Experiment/
Method
GeneKeys
T0038 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile2_TableS1_List_of_DEGs_isolated_cells_st3_comp1_hyperlink.xlsx
Table S1. List of DEGs between c versus i/p cells from stage-3 embryo (comparison I)
Display Download wild-type embryos
st_3
RNA-seq of isolated cells
RNAseq
T0039 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile2_TableS2_List_of_DEGs_isolated_cells_st3_comp2_hyperlink.xlsx
Table S2. List of DEGs between p versus c/i cells from stage-3 embryo (comparison II)
Display Download wild-type embryos
st_3
RNA-seq of isolated cells
RNAseq
T0040 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile2_TableS3_List_of_DEGs_isolated_cells_st3_comp3_hyperlink.xlsx
Table S3. List of DEGs between i versus c/p cells from stage-3 embryo (comparison III)
Display Download wild-type embryos
st_3
RNA-seq of isolated cells
RNAseq
T0041 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile2_TableS4_List_of_DEGs_isolated_cells_st4_hyperlink.xlsx
Table S4. List of DEGs between c versus p cells from stage-4 embryo
Display Download wild-type embryos
st_4
RNA-seq of isolated cells
RNAseq
T0042 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile2_TableS5_List_of_DEGs_isolated_cells_st5e_hyperlink.xlsx
Table S5. List of DEGs between c versus p cells from early stage-5 embryo
Display Download wild-type embryos
st_5
RNA-seq of isolated cells
RNAseq
T0043 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile4_TableS6_pRNAi_screen_hyperlink.xlsx
Table S6. Summary of the pilot pRNAi screen of 19 selected genes
Display Download pRNAi embryos
na
pRNAi screen
pRNAi
T0044 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile7_TableS7_List_of_bioinformatic_resources_hyperlink.xlsx
Table S7. List of bioinformatic resources used for phylogenetic characterization of GATA family members
Display Download sequences
na
transcriptomic resources
de novo assembly
T0045 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile7_TableS8_amino_acid_sequence_alignment_GATA_hyperlink.xlsx
Table S8. Amino acid sequence alignment and classification of GATA family members
Display Download sequences
na
phylogenetic analysis
sequence alignment
GATA|GATA-like|fuchi|srp|serpent|pnr|pannier|grn|grain
T0046 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile9_TableS9_List_of_DEGs_fuchi_pRNAi_st2_hyperlink.xlsx
Table S9. List of DEGs identified by comparative transcriptome analysis of fuchi pRNAi versus untreated embryos at stage 2
Display Download fuchi pRNAi embryos
st_2
Identification of DEGs
pRNAi_RNAseq
fuchi|fuchi nashi
T0047 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile9_TableS10_List_of_DEGs_fuchi_pRNAi_st3_hyperlink.xlsx
Table S10. List of DEGs identified by comparative transcriptome analysis of fuchi pRNAi versus untreated embryos at stage 3
Display Download fuchi pRNAi embryos
st_3
Identification of DEGs
pRNAi_RNAseq
fuchi|fuchi nashi
T0048 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile9_TableS11_List_of_DEGs_fuchi_pRNAi_st5e_hyperlink.xlsx
Table S11. List of DEGs identified by comparative transcriptome analysis of fuchi pRNAi versus untreated embryos at early stage 5
Display Download fuchi pRNAi embryos
st_5
Identification of DEGs
pRNAi_RNAseq
fuchi|fuchi nashi
T0049 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile10_TableS12_ATAC-seq_peaks_fuchi_pRNAi_hyperlink.xlsx
Table S12. Data from comparative analysis of read counts in extracted ATAC-seq peaks between fuchi pRNAi and wild-type embryos
Display Download fuchi pRNAi embryos
st_3
ATAC-seq of early embryos
pRNAi_ATAC-seq
fuchi|fuchi nashi
T0050 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile10_TableS13_diff_ATAC-seq_peaks_fuchi_pRNAi_hyperlink.xlsx
Table S13. List of differential ATAC-seq peaks between fuchi pRNAi and wild-type embryos at stage 3 (FDR < 0.05)
Display Download fuchi pRNAi embryos
st_3
ATAC-seq of early embryos
pRNAi_ATAC-seq
fuchi|fuchi nashi
T0051 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile11_TableS14_ATAC-seq_peaks_hh_pRNAi_hyperlink.xlsx
Table S14. Data from comparative analysis of read counts in extracted ATAC-seq peaks between Pt-hh pRNAi and wild-type embryos
Display Download hh pRNAi embryos
st_3
ATAC-seq of early embryos
pRNAi_ATAC-seq
hedgehog|hh
T0052 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile11_TableS15_diff_ATAC-seq_peaks_hh_pRNAi_hyperlink.xlsx
Table S15. List of differential ATAC-seq peaks between Pt-hh pRNAi and wild-type embryos at stage 3 (FDR < 0.05)
Display Download hh pRNAi embryos
st_3
ATAC-seq of early embryos
pRNAi_ATAC-seq
hedgehog|hh
T0053 Iwasaki-Yokozawa et al. (2022)
BMC Biol
2022BMCbiol/Addfile12_Table16_Primers_and_cDNA_clones_hyperlink.xlsx
Table S16. Primers and cDNA clones used for RNAi and in situ hybridization
Display Download primers_clones
na
na
PCR_EST_cloning
16 tables are displayed (max. 1000).
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Last updated by hiroki oda, 2020.9.10