| List of tables on | |||||||||
| Table ID | Reference/ Journal | Folder/File name (data table)/ Table title | Display | Download | Sample/ Stage | Experiment/ Method | Gene | Keys | |
|---|---|---|---|---|---|---|---|---|---|
| T0038 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile2_TableS1_List_of_DEGs_isolated_cells_st3_comp1_hyperlink.xlsx Table S1. List of DEGs between c versus i/p cells from stage-3 embryo (comparison I) |
Display | Download | wild-type embryos st_3 |
RNA-seq of isolated cells RNAseq |
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| T0039 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile2_TableS2_List_of_DEGs_isolated_cells_st3_comp2_hyperlink.xlsx Table S2. List of DEGs between p versus c/i cells from stage-3 embryo (comparison II) |
Display | Download | wild-type embryos st_3 |
RNA-seq of isolated cells RNAseq |
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| T0040 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile2_TableS3_List_of_DEGs_isolated_cells_st3_comp3_hyperlink.xlsx Table S3. List of DEGs between i versus c/p cells from stage-3 embryo (comparison III) |
Display | Download | wild-type embryos st_3 |
RNA-seq of isolated cells RNAseq |
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| T0041 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile2_TableS4_List_of_DEGs_isolated_cells_st4_hyperlink.xlsx Table S4. List of DEGs between c versus p cells from stage-4 embryo |
Display | Download | wild-type embryos st_4 |
RNA-seq of isolated cells RNAseq |
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| T0042 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile2_TableS5_List_of_DEGs_isolated_cells_st5e_hyperlink.xlsx Table S5. List of DEGs between c versus p cells from early stage-5 embryo |
Display | Download | wild-type embryos st_5 |
RNA-seq of isolated cells RNAseq |
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| T0043 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile4_TableS6_pRNAi_screen_hyperlink.xlsx Table S6. Summary of the pilot pRNAi screen of 19 selected genes |
Display | Download | pRNAi embryos na |
pRNAi screen pRNAi |
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| T0044 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile7_TableS7_List_of_bioinformatic_resources_hyperlink.xlsx Table S7. List of bioinformatic resources used for phylogenetic characterization of GATA family members |
Display | Download | sequences na |
transcriptomic resources de novo assembly |
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| T0045 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile7_TableS8_amino_acid_sequence_alignment_GATA_hyperlink.xlsx Table S8. Amino acid sequence alignment and classification of GATA family members |
Display | Download | sequences na |
phylogenetic analysis sequence alignment |
GATA|GATA-like|fuchi|srp|serpent|pnr|pannier|grn|grain | ||
| T0046 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile9_TableS9_List_of_DEGs_fuchi_pRNAi_st2_hyperlink.xlsx Table S9. List of DEGs identified by comparative transcriptome analysis of fuchi pRNAi versus untreated embryos at stage 2 |
Display | Download | fuchi pRNAi embryos st_2 |
Identification of DEGs pRNAi_RNAseq |
fuchi|fuchi nashi | ||
| T0047 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile9_TableS10_List_of_DEGs_fuchi_pRNAi_st3_hyperlink.xlsx Table S10. List of DEGs identified by comparative transcriptome analysis of fuchi pRNAi versus untreated embryos at stage 3 |
Display | Download | fuchi pRNAi embryos st_3 |
Identification of DEGs pRNAi_RNAseq |
fuchi|fuchi nashi | ||
| T0048 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile9_TableS11_List_of_DEGs_fuchi_pRNAi_st5e_hyperlink.xlsx Table S11. List of DEGs identified by comparative transcriptome analysis of fuchi pRNAi versus untreated embryos at early stage 5 |
Display | Download | fuchi pRNAi embryos st_5 |
Identification of DEGs pRNAi_RNAseq |
fuchi|fuchi nashi | ||
| T0049 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile10_TableS12_ATAC-seq_peaks_fuchi_pRNAi_hyperlink.xlsx Table S12. Data from comparative analysis of read counts in extracted ATAC-seq peaks between fuchi pRNAi and wild-type embryos |
Display | Download | fuchi pRNAi embryos st_3 |
ATAC-seq of early embryos pRNAi_ATAC-seq |
fuchi|fuchi nashi | ||
| T0050 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile10_TableS13_diff_ATAC-seq_peaks_fuchi_pRNAi_hyperlink.xlsx Table S13. List of differential ATAC-seq peaks between fuchi pRNAi and wild-type embryos at stage 3 (FDR < 0.05) |
Display | Download | fuchi pRNAi embryos st_3 |
ATAC-seq of early embryos pRNAi_ATAC-seq |
fuchi|fuchi nashi | ||
| T0051 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile11_TableS14_ATAC-seq_peaks_hh_pRNAi_hyperlink.xlsx Table S14. Data from comparative analysis of read counts in extracted ATAC-seq peaks between Pt-hh pRNAi and wild-type embryos |
Display | Download | hh pRNAi embryos st_3 |
ATAC-seq of early embryos pRNAi_ATAC-seq |
hedgehog|hh | ||
| T0052 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile11_TableS15_diff_ATAC-seq_peaks_hh_pRNAi_hyperlink.xlsx Table S15. List of differential ATAC-seq peaks between Pt-hh pRNAi and wild-type embryos at stage 3 (FDR < 0.05) |
Display | Download | hh pRNAi embryos st_3 |
ATAC-seq of early embryos pRNAi_ATAC-seq |
hedgehog|hh | ||
| T0053 | Iwasaki-Yokozawa et al. (2022) BMC Biol |
2022BMCbiol/Addfile12_Table16_Primers_and_cDNA_clones_hyperlink.xlsx Table S16. Primers and cDNA clones used for RNAi and in situ hybridization |
Display | Download | primers_clones na |
na PCR_EST_cloning |
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