Summary of RNA-seq, Mapping, and HTseq-count

Data file S1. Summary of RNA-seq, Mapping, and HTseq-count
adapted from Akiyama-Oda and Oda, Sci. Adv. 6, eaba7261 (2020)
under a Creative Commons Attribution License 4.0 (CC BY 4.0)
RNAi Gene Spider ID Stage Egg Laying Day (after the first injection) RNA-seq Mapping HTseq-count
Row Reads After Trimming Mapped Reads After Filtering Counted Reads Ambiguous No feature
gfp KK598 Stage 3 Day -2 (Control) 16,492,799 13,567,676 12,876,863 10,623,297 8,789,307 21,616 1,812,374
gfp KK598 Stage 3 Day 13 16,985,671 12,895,250 12,139,343 9,739,954 7,966,180 19,194 1,754,580
gfp KK598 Stage 3 Day 17 24,008,244 10,146,776 9,697,391 8,174,896 7,271,967 16,838 886,091
gfp KK598 Stage 3 Day 22 16,874,617 12,278,010 11,339,101 9,189,402 7,770,761 20,227 1,398,414
gfp KK598 Stage 5 Day -2 (Control) 18,908,900 16,610,890 15,776,033 12,978,821 10,441,247 61,311 2,476,263
gfp KK598 Stage 5 Day 13 19,479,674 14,826,687 14,162,983 11,856,894 9,956,683 46,623 1,853,588
gfp KK598 Stage 5 Day 17 12,315,897 10,615,398 10,243,791 8,776,336 7,464,182 30,193 1,281,961
gfp KK598 Stage 5 Day 22 17,205,373 15,668,990 14,996,300 12,551,004 10,543,487 59,399 1,948,118
gfp T1412 Stage 3 Day -1 (Control) 16,824,514 15,256,774 14,411,092 11,757,373 9,870,334 20,187 1,866,852
gfp T1412 Stage 3 Day 15 18,649,565 14,622,537 13,711,756 10,931,573 8,808,495 21,192 2,101,886
gfp T1412 Stage 3 Day 20 16,654,522 13,467,432 12,606,978 10,349,317 8,597,964 18,583 1,732,770
gfp T1412 Stage 5 Day -1 (Control) 18,631,166 17,919,370 17,593,463 14,617,705 12,467,917 46,383 2,103,405
gfp T1412 Stage 5 Day 15 17,196,124 13,681,262 13,166,148 11,027,950 9,151,737 42,940 1,833,273
gfp T1412 Stage 5 Day 20 17,949,638 16,306,575 15,698,755 13,271,784 11,240,321 43,327 1,988,136
gfp NN749 Stage 3 Day -1 (Control) 15,859,780 13,734,529 13,199,817 11,025,246 8,480,597 22,364 2,522,285
gfp NN749 Stage 3 Day 21 19,015,317 14,367,046 13,724,392 11,542,995 9,444,013 24,096 2,074,886
gfp NN749 Stage 5 Day -1 (Control) 15,122,812 14,100,269 13,415,044 11,297,649 8,917,602 51,679 2,328,368
gfp NN749 Stage 5 Day 21 15,475,341 14,236,345 13,491,362 11,270,495 8,965,391 49,674 2,255,430
gfp 27O Stage 5 Day -3 (Control) 17,774,015 16,904,291 16,365,335 13,775,800 11,470,664 47,951 2,257,185
gfp 27O Stage 5 Day 19 16,156,752 14,942,383 14,384,298 12,157,403 9,839,024 47,875 2,270,504
gfp 27O Stage 6 Day -3 (Control) 17,499,321 16,764,561 16,175,871 13,502,371 11,150,513 57,991 2,293,867
gfp 27O Stage 6 Day 19 17,443,451 16,961,715 16,331,853 13,664,774 11,302,611 66,552 2,295,611
gfp 27W Stage 5 Day -2 (Control) 17,163,164 16,723,604 16,023,332 13,080,886 10,643,435 53,541 2,383,910
gfp 27W Stage 5 Day 20 17,499,411 16,872,009 16,062,129 13,024,595 10,325,438 46,605 2,652,552
gfp 27W Stage 6 Day -2 (Control) 18,070,733 17,156,237 16,460,689 13,507,156 11,036,780 45,971 2,424,405
gfp 27W Stage 6 Day 20 16,893,997 16,295,455 15,505,478 12,539,103 10,105,237 46,081 2,387,785
Pt-hh NN588 Stage 3 Day -2 (Control) 16,069,834 15,826,127 15,163,107 12,143,810 8,603,928 16,753 3,523,129
Pt-hh NN588 Stage 3 Day 16 12,486,855 12,363,753 11,825,435 9,533,242 6,924,595 13,866 2,594,781
Pt-hh NN588 Stage 3 Day 20 18,065,485 17,803,617 17,112,045 13,717,380 9,738,213 20,765 3,958,402
Pt-hh NN588 Stage 5 Day -2 (Control) 13,301,712 13,204,651 12,615,778 10,279,411 7,119,180 22,681 3,137,550
Pt-hh NN588 Stage 5 Day 16 12,913,063 12,856,505 12,391,172 10,156,581 7,369,918 22,507 2,764,156
Pt-hh NN588 Stage 5 Day 20 11,996,819 11,948,396 11,388,758 9,219,333 6,188,457 15,569 3,015,307
Pt-hh T1270 Stage 3 Day -2 (Control) 11,898,582 11,848,138 11,007,826 8,696,751 5,961,730 10,498 2,724,523
Pt-hh T1270 Stage 3 Day 18 14,215,950 14,100,190 13,263,331 10,282,261 6,856,904 13,402 3,411,955
Pt-hh T1270 Stage 3 Day 22 17,212,315 17,051,432 16,067,597 12,951,311 9,473,776 19,403 3,458,132
Pt-hh T1270 Stage 5 Day -2 (Control) 14,567,673 14,486,231 13,843,737 11,172,879 7,528,185 28,505 3,616,189
Pt-hh T1270 Stage 5 Day 18 14,247,298 14,183,586 13,563,817 11,064,687 7,855,054 28,388 3,181,245
Pt-hh T1270 Stage 5 Day 22 16,818,562 16,757,547 15,877,285 12,954,195 8,992,530 32,342 3,929,323
Pt-ptc 23P Stage 3 Day -3 (Control) 14,708,547 14,540,564 13,605,766 10,402,047 8,223,159 19,598 2,159,290
Pt-ptc 23P Stage 3 Day 14 16,534,644 16,245,650 15,606,585 12,765,721 10,582,480 25,632 2,157,609
Pt-ptc 23P Stage 3 Day 18 19,545,516 19,411,098 18,388,855 14,507,242 11,859,986 29,158 2,618,098
Pt-ptc 23P Stage 5 Day -3 (Control) 16,745,773 16,658,864 16,002,283 12,855,542 10,518,807 61,318 2,275,417
Pt-ptc 23P Stage 5 Day 14 15,422,817 15,354,375 14,995,527 12,799,569 11,072,670 63,850 1,663,049
Pt-ptc 23P Stage 5 Day 18 16,063,637 16,007,823 15,476,180 12,735,680 10,788,056 65,628 1,881,996
Pt-ptc 23Z Stage 3 Day -1 (Control) 17,972,232 16,705,348 15,732,147 12,631,803 10,784,923 25,795 1,821,085
Pt-ptc 23Z Stage 3 Day 14 25,590,154 25,168,388 24,038,580 19,707,457 16,400,327 41,353 3,265,777
Pt-ptc 23Z Stage 3 Day 19 15,894,934 14,142,265 13,878,243 11,358,449 9,236,576 24,156 2,097,717
Pt-ptc 23Z Stage 5 Day -1 (Control) 19,043,994 16,401,551 16,079,515 13,595,812 11,479,868 68,409 2,047,535
Pt-ptc 23Z Stage 5 Day 14 22,865,750 22,566,577 22,032,396 18,454,042 15,212,108 123,594 3,118,340
Pt-ptc 23Z Stage 5 Day 19 20,271,357 18,481,001 17,190,926 14,549,885 12,356,742 87,862 2,105,281
Pt-ptc 24W Stage 3 Day -1 (Control) 14,255,891 11,008,466 10,510,770 8,631,458 7,013,796 15,934 1,601,728
Pt-ptc 24W Stage 3 Day 14 13,103,424 10,424,448 9,932,186 8,189,676 6,918,468 15,298 1,255,910
Pt-ptc 24W Stage 3 Day 19 19,455,742 13,943,364 13,194,937 10,811,164 8,685,353 19,823 2,105,988
Pt-ptc 24W Stage 5 Day -1 (Control) 18,602,936 17,569,706 15,720,552 14,232,710 11,620,400 59,572 2,552,738
Pt-ptc 24W Stage 5 Day 14 17,192,433 15,636,587 15,072,997 12,696,449 10,729,789 51,318 1,915,342
Pt-ptc 24W Stage 5 Day 19 16,472,642 14,241,093 13,720,908 11,519,213 9,405,490 48,821 2,064,902
Pt-msx1 26LL Stage 5 Day -3 (Control) 19,363,166 18,051,324 17,157,166 14,484,843 11,620,813 61,989 2,802,041
Pt-msx1 26LL Stage 5 Day 18 18,722,381 17,125,664 16,164,891 13,540,125 10,362,530 78,358 3,099,237
Pt-msx1 26LL Stage 6 Day -3 (Control) 18,028,920 17,070,764 16,569,750 14,233,292 11,621,286 70,232 2,541,774
Pt-msx1 26LL Stage 6 Day 18 18,350,258 16,540,120 15,878,650 13,455,332 10,670,229 71,165 2,713,938
Pt-msx1 27j Stage 5 Day -3 (Control) 17,409,072 16,980,127 16,305,169 13,629,278 11,263,991 59,586 2,305,701
Pt-msx1 27j Stage 5 Day 14 18,134,173 14,214,267 13,737,625 11,619,919 9,940,041 43,860 1,636,018
Pt-msx1 27j Stage 6 Day -3 (Control) 16,847,922 16,193,507 15,631,425 13,184,636 11,063,289 64,947 2,056,400
Pt-msx1 27j Stage 6 Day 14 16,065,994 14,834,082 14,351,153 12,172,199 10,225,628 53,040 1,893,531
Pt-msx1 27t Stage 5 Day -3 (Control) 15,246,253 14,549,974 14,066,153 10,865,120 9,106,833 61,436 1,696,851
Pt-msx1 27t Stage 5 Day 24 19,102,690 16,685,655 16,047,692 12,304,069 10,230,057 76,338 1,997,674
Pt-msx1 27t Stage 6 Day -3 (Control) 15,189,780 14,522,002 13,999,379 10,686,815 8,725,236 66,902 1,894,677
Pt-msx1 27t Stage 6 Day 24 19,306,496 15,135,359 14,569,101 11,530,905 9,697,445 62,488 1,770,972