Table S15. List of differential ATAC-seq peaks between Pt-hh pRNAi and wild-type embryos at stage 3 (FDR < 0.05).
sort	peak ID	scaffold	start	end	width	logFC	logCPM	F	PValue	FDR	up/down	significance	peak_center	nearest_gene	gene_start	gene_end	augID	product	note
1	5012	NW_018373023.1	904768	905200	433	10.0297445	0.93290106	162.300832	2.25E-08	0.00038409	up	significant	904984	LOC107456693	909041	909529	aug3.g8767	cuticle protein 10.9-like
2	10199	NW_018377500.1	3271076	3271331	256	3.51371023	0.92673728	80.4505501	5.89E-07	0.0050186	up	significant	3271216	LOC107449698	3117453	3257597	aug3.g20884	diuretic hormone class 2-like	This peak was considered to be non-specific because essentially the same peak was listed from the comparison between the fuchi pRNAi and wild-type samples.
3	1228	NW_018369356.1	171217	171557	341	2.88033004	1.24943756	56.4909323	4.19E-06	0.02382378	up	significant	171387	LOC107441946	182344	183105	aug3.g16274	jerky protein homolog-like