| Table S4.3. Cluster 3 markers identified in the first single-cell
RNA-seq analysis. |
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| Gene ID (NCBI) |
p_val |
avg_log2FC |
*pct.1 |
*pct.2 |
p_val_adj |
Gene ID (NCBI) |
Product (NCBI) |
aug3 gene model |
Gene name |
**Expression in RNAi embryos |
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| LOC107456035 |
1.94E-46 |
1.71533382 |
0.78 |
0.163 |
3.43E-42 |
LOC107456035 |
homeobox protein
B-H1 |
aug3.g8250 |
Pt-BarH1 |
hh5 - |
ptc5 + |
msx6 + |
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| LOC107437002 |
2.73E-33 |
1.15448987 |
0.913 |
0.445 |
4.82E-29 |
LOC107437002 |
adhesion G
protein-coupled receptor L1-like, transcript variant
X2 |
aug3.g9493 |
Pt-latrophilin-B |
hh5 - |
ptc5 + |
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| LOC107437305 |
1.69E-25 |
1.05995632 |
0.68 |
0.234 |
2.98E-21 |
LOC107437305 |
zinc finger
protein ZIC 4-like |
aug3.g12202 |
Pt-opa |
hh5 - |
ptc5 + |
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| LOC107445973 |
6.36E-20 |
0.74919191 |
0.967 |
0.859 |
1.12E-15 |
LOC107445973 |
uncharacterized
LOC107445973 |
aug3.g18851 |
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ptc5 + |
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fuchi3 - |
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| LOC107456830 |
8.02E-17 |
0.71759803 |
0.893 |
0.594 |
1.42E-12 |
LOC107456830 |
serine-rich
adhesin for platelets, transcript variant X1 |
aug3.g8856 |
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hh5 - |
ptc5 + |
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| LOC107455686 |
1.25E-16 |
0.49601341 |
0.267 |
0.028 |
2.22E-12 |
LOC107455686 |
homeobox protein
Hox-A1-like |
aug3.g7954 |
Pt-lab-A |
hh5 - |
ptc5 + |
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| LOC107442769 |
2.48E-16 |
0.81994985 |
0.947 |
0.777 |
4.38E-12 |
LOC107442769 |
neurogenic locus
Notch protein |
aug3.g27737 |
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| LOC107436358 |
6.01E-16 |
0.72675686 |
0.987 |
0.758 |
1.06E-11 |
LOC107436358 |
fasciclin-2,
transcript variant X7 |
aug3.g11491 |
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| LOC107450101 |
6.24E-16 |
0.63480609 |
0.52 |
0.169 |
1.10E-11 |
LOC107450101 |
dendritic arbor
reduction protein 1, transcript variant X1 |
aug3.g15550 |
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hh5 - |
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| LOC107453053 |
1.19E-15 |
0.91336738 |
0.96 |
0.797 |
2.11E-11 |
LOC107453053 |
inner centromere
protein A-like, transcript variant X1 |
aug3.g5177 |
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hh5 - |
ptc5 + |
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| LOC107440240 |
4.57E-14 |
0.81276271 |
0.847 |
0.62 |
8.07E-10 |
LOC107440240 |
protein
patched-like |
aug3.g14374 |
Pt-ptc |
hh5 - |
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| LOC107437748 |
1.81E-13 |
0.79160883 |
0.8 |
0.496 |
3.19E-09 |
LOC107437748 |
adipolin-like |
aug3.g12543 |
Pt-fam132B |
hh5 - |
ptc5 + |
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| LOC107443696 |
9.65E-11 |
0.56197601 |
0.633 |
0.397 |
1.71E-06 |
LOC107443696 |
protein snail
homolog Sna |
aug3.g416 |
Pt-sna |
hh5 - |
ptc5 + |
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| LOC107451579 |
1.94E-10 |
0.62004722 |
0.493 |
0.242 |
3.43E-06 |
LOC107451579 |
E3
ubiquitin-protein ligase Rnf220, transcript variant X1 |
aug3.g4121 |
Pt-rnf220 |
hh5 - |
ptc5 - |
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| LOC107457539 |
4.00E-10 |
0.50705253 |
0.767 |
0.518 |
7.06E-06 |
LOC107457539 |
zinc finger
homeobox protein 3-like, transcript variant X2 |
aug3.g11268 |
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hh5 - |
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fuchi3 + |
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| LOC107446842 |
9.45E-10 |
0.56274817 |
0.927 |
0.715 |
1.67E-05 |
LOC107446842 |
uncharacterized
LOC107446842 |
aug3.g1486 |
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hh5 - |
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fuchi3 + |
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| LOC107445501 |
1.22E-08 |
0.51618957 |
0.813 |
0.62 |
2.15E-04 |
LOC107445501 |
transducin-like
enhancer protein 4, transcript variant X4 |
aug3.g25605 |
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hh5 - |
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| LOC107441835 |
1.94E-08 |
0.69590328 |
0.767 |
0.572 |
3.42E-04 |
LOC107441835 |
uncharacterized
LOC107441835 |
aug3.g16173 |
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ptc5 - |
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| LOC107440157 |
5.13E-08 |
0.47837508 |
0.58 |
0.324 |
9.07E-04 |
LOC107440157 |
zinc finger
protein 423-like, transcript variant X3 |
aug3.g14296 |
Pt-znf423 |
hh5 - |
ptc5 + |
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| LOC107450690 |
1.50E-07 |
0.45083688 |
0.767 |
0.594 |
2.65E-03 |
LOC107450690 |
uncharacterized
LOC107450690, transcript variant X4 |
aug3.g25707 |
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hh5 + |
ptc5 + |
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| LOC107451489 |
1.79E-07 |
0.35332394 |
1 |
0.961 |
3.17E-03 |
LOC107451489 |
nucleolar
protein 14, transcript variant X1 |
aug3.g4063 |
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| LOC107450063 |
2.93E-07 |
0.39429824 |
0.88 |
0.752 |
5.17E-03 |
LOC107450063 |
homeobox protein
Meis1 |
aug3.g3111 |
Pt-hth2 |
hh5 - |
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| *pct1 and pct2
mean proportion of cells that express the gene in this cluster and other
clusters, respectively. |
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| **hh5, hh pRNAi at late stage 5;
ptc5. ptc
pRNAi at late stage 5; msx6, msx1 pRNAi at stage 6;
fuchi3, fuchi pRNAi at stage 3;
fuchi5, fuchi pRNAi at stage 5; +, expression increase; -, expression
decrease |
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