Table S7. Statistics of the second single-cell and the single-nucleus RNA-seq experiment.
Genome	Ver.2	Ver.2	Ver.3	Ver.3	Ver.3_modified	Ver.3_modified
Library	cell	nuc	cell	nuc	cell	nuc
Total_Reads_in_FASTQ	262,789,250	212,772,149	262,789,250	212,772,149	262,789,250	212,772,149
Total_Filtered_Reads	253,646,759	208,940,826	253,646,759	208,940,826	253,646,759	208,940,826
Q30_Bases_in_Filtered_R2 (%)	89.62	88.39	89.62	88.39	89.62	88.39
Reads Assigned_to_Cell_Labels (%)	90.76	88.94	90.76	88.94	90.76	88.94
Cellular_Reads_Aligned_Uniquely_to_Annotated_Transcriptome (%)	54.3	21.4	58.99	24.52	60.88	47.25
Cellular_Reads_Aligned_Uniquely_to_Other_Genomic_Regions (%)	26.66	56.28	24.08	52.74	22.4	31.37
Cellular_Reads_Aligned_Not_Unique (%)	4.04	5.26	2.34	5.26	2.22	3.9
Cellular_Reads_Unaligned (%)	1.8	0.91	1.4	1.34	1.31	1.34
Cellular_Reads_Aligned_Uniquely_to_Annotated_Transcriptome	137,737,312	44,721,667	149,621,659	51,225,493	154,420,539	98,722,283
Total_Raw_Molecules	89,663,338	14,926,154	97,293,309	17,026,410	100,504,366	33,092,094
Total_RSEC_Molecules	88,525,400	14,117,753	96,057,558	16,098,977	99,241,542	31,363,366
Mean_Raw_Sequencing_Depth	1.54	3	1.54	3.01	1.54	2.98
Mean_RSEC_Sequencing_Depth	1.56	3.17	1.56	3.18	1.56	3.15
Sequencing_Saturation	58.97	89.9	59.07	90.02	58.96	89.62
Putative_Cell_Count	5,308	5,426	5,361	5,218	5,501	5,145
Mean_Reads_per_Cell	15914.78	7134.91	17078.24	8455.39	17343.24	16985.31
Mean_Molecules_per_Cell	10204.34	2234.35	10936.98	2637.34	11116.96	5362.98
Mean_Targets_per_Cell	2350.58	1353.8	2505.43	1528.25	2625.36	2482.56
Total_Targets_Detected	16,488	17,000	17,493	18,352	19,114	20,403