Table S8. 85 DEGs between two presumptive ectodermal clusters.
Gene ID (NCBI)	p_val	avg_log2FC	pct.1	pct.2	p_val_adj	total molecules (cell)*	total molecules (nuc)*	aug3 gene model	Product (NCBI)
LOC107447334	0	-0.9533526	1	1	0	196586	18023	aug3.g1688	elongation factor 1-alpha
LOC107449384	0	-0.9419417	1	1	0	127633	13451	aug3.g20716	60S ribosomal protein L9
LOC107455581	0	1.93028984	1	0.997	0	87526	4682	aug3.g7878	60S ribosomal protein L9
LOC107449508	5.46E-271	-0.7812887	0.998	1	9.55E-267	49631	23201	aug3.g15449	histone H2A.Z-specific chaperone CHZ1
LOC107445468	2.46E-241	-0.6548871	0.99	1	4.30E-237	37543	14062	aug3.g18569	elongation factor 1-beta
LOC107445480	5.75E-232	0.77189006	0.62	0.06	1.01E-227	2221	21251	aug3.g31	uncharacterized LOC107445480
LOC107450429	2.11E-208	-0.6381179	0.991	1	3.69E-204	28704	5464	aug3.g21201	protein D3
LOC107453668	8.62E-160	-0.6800472	0.93	0.99	1.51E-155	19707	10692	aug3.g5678,aug3.g5679,aug3.g5677	transcription factor E2F6
LOC107456514	3.09E-140	-0.4804623	1	1	5.40E-136	190285	6476	aug3.g25255	60S ribosomal protein L12
LOC107449517	1.50E-128	-0.5643517	0.942	0.978	2.63E-124	17837	4759	aug3.g15446	protein PBDC1
LOC107437340	3.03E-128	-0.5760973	0.97	0.996	5.30E-124	21976	9142	aug3.g12224	protein DEK
LOC107438136	3.77E-127	-0.55099	0.984	0.997	6.59E-123	25242	12927	aug3.g26409,aug3.g26410	heat shock 70 kDa protein 4
LOC122268356	8.74E-114	1.34597932	0.771	0.446	1.53E-109	38676	2929	aug3.g25255	60S ribosomal protein L12-like
LOC107447984	2.22E-112	-0.2895981	1	1	3.89E-108	234644	10097	aug3.g15252	60S ribosomal protein L23
LOC107438957	5.17E-106	-0.4561433	0.995	0.999	9.04E-102	34422	11346	aug3.g13486	uncharacterized LOC107438957
LOC107449552	6.29E-105	-0.5272879	0.847	0.951	1.10E-100	10701	5623	aug3.g20811	tubulin beta chain
LOC107449513	2.87E-101	-0.5270004	0.869	0.962	5.02E-97	11698	6122	aug3.g15448	probable protein phosphatase 2C 6
LOC107445216	4.00E-96	0.54046228	0.745	0.448	7.00E-92	4131	13248	aug3.g10102,aug3.g10682	ecto-NOX disulfide-thiol exchanger 2
LOC107445841	7.38E-95	-0.5180208	0.793	0.935	1.29E-90	11476	5431	aug3.g18790	phenylacetaldehyde reductase
LOC107452937	1.23E-94	-0.2727141	0.022	0.285	2.16E-90	630	3037		uncharacterized LOC107452937
LOC107454980	1.00E-91	-0.4673533	0.945	0.985	1.75E-87	16533	4858	aug3.g6707	uncharacterized LOC107454980
LOC107441752	2.02E-90	-0.2924968	1	1	3.54E-86	125485	16915	aug3.g16084	elongation factor 1-gamma
LOC107446769	2.31E-87	0.38551259	0.384	0.088	4.05E-83	1190	1982	aug3.g19368	U1 small nuclear ribonucleoprotein A
LOC107455469	3.28E-86	-0.4929125	0.785	0.922	5.73E-82	9176	1663	aug3.g25059	thioredoxin
LOC107455865	1.14E-78	-0.4421602	0.79	0.914	1.99E-74	8603	903	aug3.g25141	peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
LOC107446432	2.82E-77	-0.4577223	0.819	0.934	4.93E-73	9847	1939	aug3.g1328	eukaryotic translation initiation factor 4E type 2
LOC107453752	1.38E-76	-0.4735599	0.801	0.929	2.41E-72	9806	6210	aug3.g5771	ras-like GTP-binding protein RHO
LOC107443156	1.16E-74	-0.4375236	0.847	0.943	2.03E-70	10277	2553	aug3.g17056	uncharacterized LOC107443156
LOC107448332	1.61E-69	-0.4327867	0.742	0.889	2.82E-65	7591	11839	aug3.g13	plasminogen activator inhibitor 1 RNA-binding protein
LOC107449381	3.18E-69	-0.451502	0.575	0.805	5.56E-65	5172	3330	aug3.g2722	pleiotrophin
LOC107455891	1.67E-67	-0.386606	0.208	0.483	2.92E-63	1698	539	aug3.g3598,aug3.g8122,aug3.g14156	uncharacterized LOC107455891
LOC107438125	3.38E-67	-0.470076	0.703	0.871	5.91E-63	7651	7384	aug3.g26396	fructose-2,6-bisphosphatase TIGAR
LOC107457339	1.66E-66	-0.4394902	0.808	0.929	2.90E-62	9192	7171	aug3.g11094,aug3.g11095,aug3.g11093	putative ATP-dependent RNA helicase Pl10
LOC107439559	1.84E-66	0.51750736	0.989	0.973	3.22E-62	21949	7569	aug3.g13866	cellular tumor antigen p53
LOC122272513	3.57E-64	0.52935471	0.877	0.758	6.24E-60	10273	451	aug3.g24990	uncharacterized LOC122272513
LOC107448370	6.19E-62	-0.4084212	0.853	0.942	1.08E-57	10671	2274	aug3.g2175	transmembrane emp24 domain-containing protein 7
LOC107437598	1.19E-60	-0.4330217	0.701	0.863	2.07E-56	6939	2734	aug3.g12460	acyl-protein thioesterase 2
LOC107448376**	3.50E-60	-0.3974322	0.638	0.829	6.12E-56	5649	2776	aug3.g2182	ubiquitin-conjugating enzyme E2 C
LOC107443752	4.63E-57	-0.3878599	0.493	0.724	8.10E-53	4026	500	aug3.g525	protein FMC1 homolog
LOC107455085	9.92E-57	-0.3922034	0.678	0.843	1.74E-52	5721	4203	aug3.g24986	uncharacterized LOC107455085
LOC107436645	1.23E-52	-0.364031	0.647	0.832	2.15E-48	5582	1887	aug3.g11725	dihydropyrimidinase
LOC107439167	2.85E-51	-0.3721088	0.678	0.833	4.98E-47	5855	4433	aug3.g13614,aug3.g13613	uncharacterized LOC107439167
LOC107456718	1.07E-50	-0.3679712	0.589	0.777	1.87E-46	4802	1628	aug3.g25301	translocon-associated protein subunit delta
LOC107455123	1.08E-50	-0.3578617	0.757	0.89	1.89E-46	7092	2134	aug3.g6822	eukaryotic translation initiation factor 4H
LOC107448593	1.55E-48	0.33535523	0.411	0.183	2.72E-44	1641	4077	aug3.g20370	uncharacterized LOC107448593
LOC107444458	2.61E-48	0.51288747	0.815	0.694	4.57E-44	7299	17053	aug3.g17894,aug3.g17895	E3 ubiquitin-protein ligase Mdm2
LOC107442039	2.10E-46	-0.4070647	0.864	0.936	3.67E-42	13667	1508	aug3.g16306	histone H1E
LOC107450105	5.14E-46	-0.3446368	0.764	0.907	9.00E-42	8322	3156	aug3.g15548	leucine-rich repeat-containing protein 59
LOC107446658	2.51E-45	-0.389975	0.742	0.855	4.38E-41	7789	11222	aug3.g7584	la-related protein 1
LOC107457515	1.61E-44	-0.335186	0.509	0.714	2.82E-40	3873	611	aug3.g11232	uncharacterized LOC107457515
LOC107440431	9.53E-43	0.33445986	0.42	0.191	1.67E-38	2089	16935	aug3.g27058	SEC14-like protein 2
LOC107453494	2.03E-41	-0.3457709	0.672	0.835	3.54E-37	6443	7163	aug3.g23816,aug3.g23814	F-actin-monooxygenase MICAL3
LOC122268403	9.07E-41	-0.3434858	0.622	0.784	1.59E-36	5046	5361	aug3.g13669	rRNA biogenesis protein rrp5-like
LOC110282427	3.59E-40	-0.336079	0.618	0.778	6.29E-36	5432	1281	aug3.g434,aug3.g25748	nucleoside diphosphate kinase-like
LOC107447775	5.13E-40	-0.3155888	0.469	0.668	8.98E-36	3352	2245	aug3.g1916	uracil-DNA glycosylase
LOC107453416	3.09E-39	-0.3243834	0.562	0.744	5.41E-35	4498	512	aug3.g5469	reactive oxygen species modulator 1
LOC107437643	3.85E-39	-0.3029935	0.389	0.612	6.74E-35	3043	3421	aug3.g12476,aug3.g16392	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
LOC107452952	7.18E-39	-0.305878	0.42	0.623	1.26E-34	3021	2168	aug3.g10684	uncharacterized LOC107452952
LOC107443764	3.86E-38	-0.3024845	0.433	0.647	6.75E-34	3071	2838	aug3.g513	poly [ADP-ribose] polymerase 2
LOC107455315	4.36E-38	-0.2926105	0.43	0.627	7.62E-34	2992	3815	aug3.g7641	CTD small phosphatase-like protein 2-A
LOC107451692	5.97E-38	-0.2951625	0.954	0.98	1.04E-33	16515	3297	aug3.g4228	translocon-associated protein subunit alpha
LOC107439019	2.94E-37	-0.3140791	0.729	0.852	5.14E-33	7054	1695	aug3.g13506	uncharacterized LOC107439019
LOC107449190	4.99E-37	0.43264645	0.499	0.305	8.73E-33	4215	14134	aug3.g2603	uncharacterized LOC107449190
LOC107454852	1.02E-36	-0.3031597	0.411	0.61	1.78E-32	2800	8302	aug3.g6606	serine/threonine-protein phosphatase 6 regulatory subunit 3
LOC107446973	6.28E-36	-0.2987479	0.62	0.778	1.10E-31	4958	5796	aug3.g19493,aug3.g19920	programmed cell death protein 4
LOC107456224	6.96E-36	-0.3209897	0.574	0.752	1.22E-31	4804	23893	aug3.g8395	cAMP-dependent protein kinase catalytic subunit 1
LOC107452170	1.94E-35	-0.3007381	0.864	0.948	3.40E-31	12059	5890	aug3.g4556	arginine kinase Lit v 2
LOC107436687	2.06E-35	0.25690374	0.995	0.988	3.60E-31	27733	6887	aug3.g26077,aug3.g26078	CWF19-like protein 2
LOC107440094	2.39E-35	-0.2994013	0.57	0.744	4.19E-31	5144	2056	aug3.g26978	glutathione S-transferase Mu 1
LOC122272282	2.68E-35	0.34081703	0.927	0.743	4.69E-31	12242	3217	aug3.g6211	GTP-binding protein 4-like
LOC107444575	4.56E-35	-0.2952448	0.74	0.859	7.98E-31	7276	6999	aug3.g17961	staphylococcal nuclease domain-containing protein 1
LOC107452007	3.07E-34	-0.2929865	0.578	0.732	5.37E-30	4459	6215	aug3.g10624	BRISC complex subunit Abraxas 2
LOC107448365	1.12E-33	-0.2757583	0.549	0.72	1.95E-29	3988	4733	aug3.g2173	DNA mismatch repair protein Msh6
LOC107457559	1.47E-33	-0.2533162	0.301	0.503	2.58E-29	2051	5112	aug3.g25932	MIP18 family protein galla-2
LOC107449536	7.39E-33	-0.2788327	0.457	0.647	1.29E-28	3679	1809	aug3.g20804	uncharacterized LOC107449536
LOC107451030	1.04E-32	-0.2969913	0.534	0.709	1.83E-28	3653	2685	aug3.g211	proton channel OtopLc
LOC107452928	1.28E-32	0.30989901	0.678	0.523	2.24E-28	4040	12112	aug3.g10682	ecto-NOX disulfide-thiol exchanger 2
LOC107451617	5.79E-31	-0.2896552	0.543	0.715	1.01E-26	4096	634	aug3.g29	UPF0545 protein C22orf39 homolog
LOC107437962	7.15E-31	-0.3713883	0.383	0.566	1.25E-26	5445	2553	aug3.g9571,aug3.g10115,aug3.g9570	calcium homeostasis modulator protein 6
LOC107456071	8.49E-31	0.2756208	0.983	0.962	1.48E-26	18057	10216	aug3.g25167	probable ATP-dependent RNA helicase DDX46
LOC122268338	8.97E-31	-0.3065322	0.6	0.76	1.57E-26	5271	1153	aug3.g11578	triadin-like
LOC107449382	1.07E-30	-0.3099631	0.662	0.803	1.86E-26	5902	4099	aug3.g2730	glypican-6
LOC107456305	1.52E-30	0.31082295	0.694	0.551	2.66E-26	4269	5603	aug3.g8486	ATPase family protein 2 homolog
LOC107448232	1.68E-30	0.37916683	0.916	0.867	2.94E-26	10289	2740	aug3.g2148	uncharacterized LOC107448232
LOC107445917	4.19E-30	-0.2868701	0.523	0.683	7.33E-26	4106	9963	aug3.g146	protein hu-li tai shao
*Total numbers of molecules detected in the second single-cell (cell) and sincle-nucleus (nuc) transcriptomes.
**A gene indcluded in the cell-cycle gene list.