Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st5l | GeneID(LOC) list: cluster_1


word count=55
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107438641 Ptep1.0/2.0 NW_024970218.1 160092 282110 + transcription factor Sox-13 aug3.g13250 LOC107438641 0
2 LOC107444744 Ptep1.0/2.0 NW_024969596.1 1108746 1179192 - transcription factor SOX-8 aug3.g816 LOC107444744 0
3 LOC107451809 Ptep1.0/2.0 NW_024970104.1 533940 595110 + sonic hedgehog protein-like aug3.g4322 LOC107451809 0
4 LOC107457189 Ptep1.0/2.0 NW_024971022.1 57223 104397 + homeobox protein OTX2-A-like aug3.g9172 LOC107457189 0
5 LOC107444665 Ptep1.0/2.0 NW_024970315.1 268279 295533 + nuclear receptor subfamily 2 group E member 1 aug3.g794 LOC107444665 0
6 LOC107452215 Ptep1.0/2.0 NW_024969686.1 1262457 1410355 - Krueppel-like factor 7 aug3.g4601 LOC107452215 0
7 LOC107457313 Ptep1.0/2.0 NW_024969787.1 743818 747270 - transcription factor Sox-2 aug3.g11061 LOC107457313 0
8 LOC107456035 Ptep1.0/2.0 NW_024970085.1 525831 557278 + homeobox protein B-H1 aug3.g8250 LOC107456035 0
9 LOC107457180 Ptep1.0/2.0 NW_024969714.1 1023351 1149707 - protein jagged-1 aug3.g9162,aug3.g9161 LOC107457180 0
10 LOC107436125 Ptep1.0/2.0 NW_024970622.1 72266 157702 + protein gooseberry aug3.g11337 LOC107436125 0
11 LOC107449611 Ptep1.0/2.0 NW_024969901.1 310205 442919 - protein dachsous aug3.g2859 LOC107449611 0
12 LOC107440157 Ptep1.0/2.0 NW_024970490.1 4863 141355 + zinc finger protein 423 aug3.g14296 LOC107440157 0
13 LOC107438758 Ptep1.0/2.0 NW_024970060.1 453865 533783 - epidermal growth factor receptor aug3.g13345,aug3.g13344 LOC107438758 0
14 LOC107437937 Ptep1.0/2.0 NW_024970240.1 435276 445076 - zinc finger protein Noc aug3.g12685,aug3.g23139 LOC107437937 0
15 LOC107455686 Ptep1.0/2.0 NW_024969831.1 512171 545973 + homeobox protein Hox-A1-like aug3.g7954 LOC107455686 0
16 LOC107437305 Ptep1.0/2.0 NW_024970197.1 359527 396131 - zinc finger protein ZIC 4-like aug3.g12202 LOC107437305 0
17 LOC107455688 Ptep1.0/2.0 NW_024969831.1 408849 511729 - uncharacterized LOC107455688 LOC107455688 0
18 LOC107456521 Ptep1.0/2.0 NW_024969618.1 671428 785428 - ephrin-B2a aug3.g25262 LOC107456521 0
19 LOC107445428 Ptep1.0/2.0 NW_024969822.1 115253 166067 - BMP and activin membrane-bound inhibitor homolog aug3.g18541 LOC107445428 0
20 LOC107446074 Ptep1.0/2.0 NW_024969638.1 486050 647375 - glypican-5 aug3.g1222 LOC107446074 0
21 LOC107451942 Ptep1.0/2.0 NW_024970461.1 153699 226970 + protein NDNF aug3.g4413 LOC107451942 0
22 LOC107450899 Ptep1.0/2.0 NW_024969598.1 1524043 1618053 + sal-like protein 1 aug3.g3675 LOC107450899 0
23 LOC107438011 Ptep1.0/2.0 NW_024969744.1 383869 552126 + neurogenic locus protein delta aug3.g12734 LOC107438011 0
24 LOC107456312 Ptep1.0/2.0 NW_024970889.1 209401 233571 + smoothened homolog aug3.g8490 LOC107456312 0
25 LOC107453922 Ptep1.0/2.0 NW_024969687.1 966537 1002694 + four-jointed box protein 1 aug3.g5891 LOC107453922 0
26 LOC107457564 Ptep1.0/2.0 NW_024970001.1 631432 721682 - homeobox protein OTX2 aug3.g25936 LOC107457564 0
27 LOC107439303 Ptep1.0/2.0 NW_024969993.1 200669 276532 + hemicentin-2 aug3.g13686 LOC107439303 0
28 LOC107450518 Ptep1.0/2.0 NW_024969639.1 22366 91049 + neurogenic locus Notch protein aug3.g21218 LOC107450518 0
29 LOC107447307 Ptep1.0/2.0 NW_024971214.1 14262 18868 + uncharacterized LOC107447307 aug3.g21167 LOC107447307 0
30 LOC107440240 Ptep1.0/2.0 NW_024970743.1 104190 175589 - protein patched-like aug3.g14374 LOC107440240 0
31 LOC107456634 Ptep1.0/2.0 NW_024969616.1 359408 401655 + RNA polymerase-associated protein CTR9 homolog aug3.g8712,aug3.g23794 LOC107456634 0
32 LOC107453597 Ptep1.0/2.0 NW_024969905.1 484247 573318 + fibroblast growth factor 8 aug3.g5611 LOC107453597 0
33 LOC107453313 Ptep1.0/2.0 NW_024969861.1 659544 689669 - protein naked cuticle homolog 1 aug3.g5391 LOC107453313 0
34 LOC107452888 Ptep1.0/2.0 NW_024969945.1 216162 280847 - uncharacterized LOC107452888 aug3.g5060 LOC107452888 0
35 LOC107447180 Ptep1.0/2.0 NW_024969738.1 599279 704963 + protein Wnt-5b-like aug3.g1632 LOC107447180 0
36 LOC107437772 Ptep1.0/2.0 NW_024970300.1 148355 204300 + MICAL-like protein 2 aug3.g12570 LOC107437772 0
37 LOC107456864 Ptep1.0/2.0 NW_024969914.1 23567 109354 - exonuclease GOR-like aug3.g18504,aug3.g1256 LOC107456864 0
38 LOC110283330 Ptep1.0/2.0 NW_024972665.1 10652 15547 + uncharacterized LOC110283330 aug3.g21167,aug3.g11138 LOC110283330 0
39 LOC107444253 Ptep1.0/2.0 NW_024970103.1 404502 414936 - transcription factor HES-1-A aug3.g17723 LOC107444253 0
40 LOC107451464 Ptep1.0/2.0 NW_024970103.1 528261 530087 + transcription factor HES-4-A-like aug3.g4026 LOC107451464 0
41 LOC107449667 Ptep1.0/2.0 NW_024970623.1 57574 89313 - centromere-associated protein E aug3.g10461 LOC107449667 0
42 LOC107450121 Ptep1.0/2.0 NW_024970448.1 310544 388521 + CD9 antigen aug3.g10506 LOC107450121 0
43 LOC107438242 Ptep1.0/2.0 NW_024970132.1 546577 625801 - growth arrest-specific protein 2 aug3.g12936 LOC107438242 0
44 LOC107445501 Ptep1.0/2.0 NW_024969819.1 617958 783840 - transducin-like enhancer protein 4 aug3.g25605,aug3.g25606 LOC107445501 0
45 LOC107439350 Ptep1.0/2.0 NW_024970014.1 656227 670634 + protein 60A aug3.g13706 LOC107439350 0
46 LOC107449016 Ptep1.0/2.0 NW_024969596.1 1405565 1452832 + uncharacterized LOC107449016 aug3.g2534,aug3.g2533 LOC107449016 0
47 LOC107446082 Ptep1.0/2.0 NW_024969638.1 239479 381182 + sodium- and chloride-dependent glycine transporter 1 aug3.g1218 LOC107446082 0
48 LOC107447725 Ptep1.0/2.0 NW_024969606.1 2126247 2134761 - uncharacterized LOC107447725 aug3.g1888 LOC107447725 0
49 LOC107453612 Ptep1.0/2.0 NW_024969989.1 108237 160230 + protein Wnt-8b-like aug3.g5617 LOC107453612 0
50 LOC107456324 Ptep1.0/2.0 NW_024969976.1 536789 708359 + LIX1-like protein aug3.g8496 LOC107456324 0
51 LOC107454926 Ptep1.0/2.0 NW_024970708.1 205351 232208 + bcl-2-like protein 1 aug3.g23010,aug3.g6695,aug3.g6694 LOC107454925,LOC107454926 0
52 LOC107451348 Ptep1.0/2.0 NW_024970681.1 4220 19077 + uncharacterized LOC107451348 LOC107451348 0
53 LOC107451797 Ptep1.0/2.0 NW_024970409.1 26886 93939 + uncharacterized LOC107451797 aug3.g4304 LOC107451797 0
54 LOC107444952 Ptep1.0/2.0 NW_024970418.1 452574 467586 - sterol carrier protein 2 aug3.g878 LOC107444952 0
55 LOC107437115 Ptep1.0/2.0 NW_024969780.1 1611276 1705234 - one cut domain family member 2 aug3.g26177 LOC107437115 0
55 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12