Pt_spiderBASE v3

[Top] [Home Ptep3.0] [Genes/Transcripts] [BLAST] [Info]

Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st5l | GeneID(LOC) list: cluster_2


word count=49
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107436847 Ptep1.0/2.0 NW_024969813.1 635864 695250 + T-box transcription factor TBX20-like aug3.g11865 LOC107436847 0
2 LOC107437002 Ptep1.0/2.0 NW_024971413.1 64921 188667 + adhesion G protein-coupled receptor L1 aug3.g9493 LOC107437002 0
3 LOC107456035 Ptep1.0/2.0 NW_024970085.1 525831 557278 + homeobox protein B-H1 aug3.g8250 LOC107456035 0
4 LOC107437305 Ptep1.0/2.0 NW_024970197.1 359527 396131 - zinc finger protein ZIC 4-like aug3.g12202 LOC107437305 0
5 LOC107436350 Ptep1.0/2.0 NW_024970327.1 158464 317416 + glypican-6 aug3.g11833,aug3.g11486 LOC107436350 0
6 LOC107445480 Ptep1.0/2.0 NW_024971448.1 50772 63719 + uncharacterized LOC107445480 aug3.g31 LOC107445480 7e-101
7 LOC107451579 Ptep1.0/2.0 NW_024970106.1 1155904 1253584 + E3 ubiquitin-protein ligase Rnf220 aug3.g4121 LOC107451579 0
8 LOC107436358 Ptep1.0/2.0 NW_024969815.1 644726 725669 + fasciclin-2 aug3.g11491 LOC107436358 0
9 LOC107456793 Ptep1.0/2.0 NW_024969813.1 1014111 1123993 + T-box transcription factor TBX20 aug3.g8837 LOC107456793 0
10 LOC107446842 Ptep1.0/2.0 NW_024969795.1 332945 409367 + uncharacterized LOC107446842 aug3.g1487,aug3.g1486 LOC107446842 0
11 LOC107443668 Ptep1.0/2.0 NW_024970586.1 283151 376682 - metalloprotease TIKI2 aug3.g17382,aug3.g18676 LOC107443668 0
12 LOC107455686 Ptep1.0/2.0 NW_024969831.1 512171 545973 + homeobox protein Hox-A1-like aug3.g7954 LOC107455686 0
13 LOC107440240 Ptep1.0/2.0 NW_024970743.1 104190 175589 - protein patched-like aug3.g14374 LOC107440240 0
14 LOC107457539 Ptep1.0/2.0 NW_024969659.1 595765 831003 + zinc finger homeobox protein 3 aug3.g11268 LOC107457539 0
15 LOC107455688 Ptep1.0/2.0 NW_024969831.1 408849 511729 - uncharacterized LOC107455688 LOC107455688 0
16 LOC107453771 Ptep1.0/2.0 NW_024969727.1 973540 1095466 - SPARC-related modular calcium-binding protein 2 aug3.g5781 LOC107453771 0
17 LOC107450690 Ptep1.0/2.0 NW_024970489.1 54137 109046 + uncharacterized LOC107450690 aug3.g25707 LOC107450690 0
18 LOC107451394 Ptep1.0/2.0 NW_024970213.1 343828 437631 - frizzled-5 aug3.g4009 LOC107451394 0
19 LOC107454167 Ptep1.0/2.0 NW_024995499.1 704 1065 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
19 LOC107454167_1 Ptep1.0/2.0 NW_024969641.1 594712 690101 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
20 LOC107440157 Ptep1.0/2.0 NW_024970490.1 4863 141355 + zinc finger protein 423 aug3.g14296 LOC107440157 0
21 LOC107456830 Ptep1.0/2.0 NW_024969653.1 33896 90683 - serine-rich adhesin for platelets aug3.g8856 LOC107456830 0
22 LOC107442231 Ptep1.0/2.0 NW_024969650.1 503170 644233 + uncharacterized LOC107442231 aug3.g27564,aug3.g20669,aug3.g20671 LOC107442231 0
23 LOC107453597 Ptep1.0/2.0 NW_024969905.1 484247 573318 + fibroblast growth factor 8 aug3.g5611 LOC107453597 0
24 LOC107439046 Ptep1.0/2.0 NW_024969672.1 778242 1093632 + homeobox protein extradenticle aug3.g13538,aug3.g27748,aug3.g27747 LOC107439046 0
25 LOC107439560 Ptep1.0/2.0 NW_024969640.1 689507 960935 - homeobox protein Meis2 aug3.g13867,aug3.g13868 LOC107439560 0
26 LOC107449667 Ptep1.0/2.0 NW_024970623.1 57574 89313 - centromere-associated protein E aug3.g10461 LOC107449667 0
27 LOC107450063 Ptep1.0/2.0 NW_024969698.1 603238 707119 + homeobox protein Meis1 aug3.g3111 LOC107450063 0
28 LOC107444748 Ptep1.0/2.0 NW_024970651.1 124752 158939 - uncharacterized LOC107444748 aug3.g18068 LOC107444748 0
29 LOC107437748 Ptep1.0/2.0 NW_024969659.1 2396380 2411412 - adipolin aug3.g12543 LOC107437748 0
30 LOC107444058 Ptep1.0/2.0 NW_024969988.1 655739 696415 - putative sodium-dependent multivitamin transporter aug3.g7417 LOC107444058 0
31 LOC107441084 Ptep1.0/2.0 NW_024969675.1 143417 263212 + low-density lipoprotein receptor-related protein 2 aug3.g9796 LOC107441084 0
32 LOC107436691 Ptep1.0/2.0 NW_024969616.1 2378897 2439753 + uncharacterized LOC107436691 aug3.g11765 LOC107436691 0
33 LOC107447205 Ptep1.0/2.0 NW_024969777.1 156659 277064 - roundabout homolog 1 aug3.g1658 LOC107447205 0
34 LOC107454846 Ptep1.0/2.0 NW_024970597.1 135149 243858 - RNA-binding protein fusilli aug3.g10830 LOC107454846 0
35 LOC107453655 Ptep1.0/2.0 NW_024969696.1 1744520 1760772 - RNA-binding protein MEX3B aug3.g5665 LOC107453655 0
36 LOC107456885 Ptep1.0/2.0 NW_024969920.1 334944 427608 + sodium-dependent phosphate transporter 1 aug3.g25832 LOC107456885 0
37 LOC107451143 Ptep1.0/2.0 NW_024970368.1 289804 340677 + uncharacterized LOC107451143 aug3.g3823 LOC107451143 0
38 LOC107456864 Ptep1.0/2.0 NW_024969914.1 23567 109354 - exonuclease GOR-like aug3.g18504,aug3.g1256 LOC107456864 0
39 LOC107445501 Ptep1.0/2.0 NW_024969819.1 617958 783840 - transducin-like enhancer protein 4 aug3.g25605,aug3.g25606 LOC107445501 0
40 LOC107443484 Ptep1.0/2.0 NW_024969840.1 217841 261634 - nostrin aug3.g27986 LOC107443484 0
41 LOC107445694 Ptep1.0/2.0 NW_024969911.1 448052 571614 + unconventional myosin-Vb aug3.g9254,aug3.g6148,aug3.g21618 LOC107445694 0
42 LOC110283431 Ptep1.0/2.0 NW_024969869.1 895642 904912 - uncharacterized LOC110283431 aug3.g18539 LOC110283431 0
43 LOC107450601 Ptep1.0/2.0 NW_024969913.1 90916 162015 + uncharacterized LOC107450601 aug3.g3466,aug3.g3467,aug3.g25011 LOC107450601 0
44 LOC107447950 Ptep1.0/2.0 NW_024969607.1 481897 500635 - protein lifeguard 2 aug3.g15222,aug3.g6216 LOC107447950 0
45 LOC107437822 Ptep1.0/2.0 NW_024970078.1 2219 37442 + sentrin-specific protease 6 aug3.g26588 LOC107437822 0
46 LOC122271530 Ptep1.0/2.0 NW_024970905.1 179084 206389 + protein yippee-like 1 aug3.g11843,aug3.g11842 NA 0
47 LOC107437367 Ptep1.0/2.0 NW_024970243.1 291255 302146 - H/ACA ribonucleoprotein complex subunit 4 aug3.g12249 LOC107437367 0
48 LOC107436211 Ptep1.0/2.0 NW_024969883.1 153242 167838 - KN motif and ankyrin repeat domain-containing protein 2 aug3.g11396 LOC107436211 0
49 LOC107450555 Ptep1.0/2.0 NW_024970070.1 410367 437458 + pescadillo homolog aug3.g3421,aug3.g21940 LOC107450555,LOC107453453 0
50 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
[Top] [Home Ptep3.0] [Genes/Transcripts] [BLAST] [Info]
Last updated by hiroki oda, 2025.6.12