Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st5l | GeneID(LOC) list: cluster_4


word count=37
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107440074 Ptep1.0/2.0 NW_024969612.1 558796 580628 + uncharacterized LOC107440074 aug3.g407 LOC107440074,LOC107449165 0
2 LOC107456525 Ptep1.0/2.0 NW_024969618.1 110060 125331 - delta-like protein 1 aug3.g25248 LOC107456525 0
3 LOC107436465 Ptep1.0/2.0 NW_024969927.1 663375 752696 - B-cell lymphoma/leukemia 11A aug3.g26043 LOC107436465 0
4 LOC107452006 Ptep1.0/2.0 NW_024969863.1 833764 911467 - transcription factor AP-2-beta aug3.g23531 LOC107452006 0
5 LOC107441660 Ptep1.0/2.0 NW_024970650.1 7267 100342 - unconventional myosin-Ie aug3.g9845,aug3.g9846,aug3.g22123 LOC107441660 0
6 LOC107442208 Ptep1.0/2.0 NW_024969650.1 716694 755392 + protein shifted aug3.g27568 LOC107442208 0
7 LOC107447504 Ptep1.0/2.0 NW_024969702.1 638301 654680 - homeobox protein Hox-B5b aug3.g1787,aug3.g1786 LOC107447504 0
8 LOC107446080 Ptep1.0/2.0 NW_024969727.1 155592 168820 - cyclin-dependent kinase 20 aug3.g1238 LOC107446080 0
9 LOC107450899 Ptep1.0/2.0 NW_024969598.1 1524043 1618053 + sal-like protein 1 aug3.g3675 LOC107450899 0
10 LOC107447180 Ptep1.0/2.0 NW_024969738.1 599279 704963 + protein Wnt-5b-like aug3.g1632 LOC107447180 0
11 LOC107438015 Ptep1.0/2.0 NW_024970324.1 150825 183689 - growth arrest-specific protein 1 aug3.g9575 LOC107438015 0
12 LOC107445228 Ptep1.0/2.0 NW_024970111.1 88004 113931 - protein gooseberry aug3.g18397 LOC107445228 0
13 LOC107447678 Ptep1.0/2.0 NW_024969609.1 2445589 2461432 + homeobox protein MSH-D aug3.g15189 LOC107447678 0
14 LOC107443647 Ptep1.0/2.0 NW_024969633.1 2459596 2538273 + plexin-B aug3.g17369 LOC107443647 0
15 LOC107447970 Ptep1.0/2.0 NW_024969607.1 782992 812236 + aurora kinase C aug3.g15230 LOC107447970 0
16 LOC107451685 Ptep1.0/2.0 NW_024969853.1 177887 310356 - roundabout homolog 3 aug3.g10604 LOC107451685 0
17 LOC107444558 Ptep1.0/2.0 NW_024969661.1 1338004 1430226 - paired box protein Pax-5 aug3.g762 LOC107444558 0
18 LOC107440707 Ptep1.0/2.0 NW_024969921.1 967259 1043762 - homeobox protein Mix.2-like aug3.g27124 LOC107440707 0
19 LOC107448645 Ptep1.0/2.0 NW_024969804.1 48527 119773 - transcription factor Sp9 aug3.g2333 LOC107448645 0
20 LOC107438714 Ptep1.0/2.0 NW_024970015.1 652540 747387 + transcriptional activator cubitus interruptus-like aug3.g13321 LOC107438714 0
21 LOC107453612 Ptep1.0/2.0 NW_024969989.1 108237 160230 + protein Wnt-8b-like aug3.g5617 LOC107453612 0
22 LOC107446595 Ptep1.0/2.0 NW_024971095.1 21390 66611 + uncharacterized LOC107446595 aug3.g1396 LOC107446595 0
23 LOC107436894 Ptep1.0/2.0 NW_024969612.1 1030321 1221533 + zinc finger protein rotund aug3.g394 LOC107436894 0
24 LOC107443364 Ptep1.0/2.0 NW_024970254.1 5297 27059 + uncharacterized LOC107443364 aug3.g17172 LOC107443364 0
25 LOC107446220 Ptep1.0/2.0 NW_024971225.1 16884 19096 - transcription factor Sox-14-like aug3.g24914,aug3.g24896 LOC107446335,LOC107446220 0
26 LOC107448079 Ptep1.0/2.0 NW_024969687.1 1185366 1275530 + putative epidermal cell surface receptor aug3.g20118 LOC107448079 0
27 LOC107442927 Ptep1.0/2.0 NW_024971052.1 33401 43140 + uncharacterized LOC107442927 LOC107442927 0
28 LOC107436691 Ptep1.0/2.0 NW_024969616.1 2378897 2439753 + uncharacterized LOC107436691 aug3.g11765 LOC107436691 0
29 LOC107450033 Ptep1.0/2.0 NW_024969620.1 73575 233208 + protein pangolin, isoforms A/H/I/S aug3.g10490,aug3.g18357 LOC107450033 0
30 LOC107449746 Ptep1.0/2.0 NW_024970266.1 230577 312246 - nuclear receptor subfamily 2 group F member 1-A aug3.g2915 LOC107449746 0
31 LOC107442050 Ptep1.0/2.0 NW_024970088.1 426101 534623 - laminin subunit alpha-1 aug3.g16317 LOC107442050 0
32 LOC122272790 Ptep1.0/2.0 NW_024972850.1 579 14209 + Werner syndrome ATP-dependent helicase homolog aug3.g11632 LOC107436518 0
33 LOC107446115 Ptep1.0/2.0 NW_024970281.1 10697 82354 - extracellular sulfatase Sulf-1 aug3.g18939 LOC107446115 0
34 LOC107442485 Ptep1.0/2.0 NW_024970178.1 423546 524727 - partitioning defective 3 homolog aug3.g27669 LOC107442485 0
35 LOC107445694 Ptep1.0/2.0 NW_024969911.1 448052 571614 + unconventional myosin-Vb aug3.g9254,aug3.g6148,aug3.g21618 LOC107445694 0
36 LOC107450335 Ptep1.0/2.0 NW_024969819.1 2114835 2277923 + zinc finger protein basonuclin-2 aug3.g3273 LOC107450335 0
37 LOC107455774 Ptep1.0/2.0 NW_024969995.1 194112 220878 - patatin-like phospholipase domain-containing protein 2 aug3.g8015 LOC107455774 0
37 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12