Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st5l | GeneID(LOC) list: cluster_5


word count=98
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107450100 Ptep1.0/2.0 NW_024969801.1 3126345 3185727 + homeobox protein DLX-6-like aug3.g15531 LOC107450100 0
2 LOC107454167 Ptep1.0/2.0 NW_024995499.1 704 1065 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
2 LOC107454167_1 Ptep1.0/2.0 NW_024969641.1 594712 690101 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
3 LOC107448645 Ptep1.0/2.0 NW_024969804.1 48527 119773 - transcription factor Sp9 aug3.g2333 LOC107448645 0
4 LOC107438948 Ptep1.0/2.0 NW_024969835.1 314230 529731 + rhomboid-related protein 2 aug3.g13482 LOC107438948 0
5 LOC107447504 Ptep1.0/2.0 NW_024969702.1 638301 654680 - homeobox protein Hox-B5b aug3.g1787,aug3.g1786 LOC107447504 0
6 LOC107444558 Ptep1.0/2.0 NW_024969661.1 1338004 1430226 - paired box protein Pax-5 aug3.g762 LOC107444558 0
7 LOC107456088 Ptep1.0/2.0 NW_024971649.1 3049 50280 + iroquois-class homeodomain protein IRX-6 aug3.g8295 LOC107456088 0
8 LOC107446842 Ptep1.0/2.0 NW_024969795.1 332945 409367 + uncharacterized LOC107446842 aug3.g1487,aug3.g1486 LOC107446842 0
9 LOC107442208 Ptep1.0/2.0 NW_024969650.1 716694 755392 + protein shifted aug3.g27568 LOC107442208 0
10 LOC122270927 Ptep1.0/2.0 NW_024969635.1 1163024 1288300 + uncharacterized LOC122270927 aug3.g142 NA 0
11 LOC107448055 Ptep1.0/2.0 NW_024969602.1 294505 421644 - pro-epidermal growth factor aug3.g2047 LOC107448055 0
12 LOC107442927 Ptep1.0/2.0 NW_024971052.1 33401 43140 + uncharacterized LOC107442927 LOC107442927 0
13 LOC107436691 Ptep1.0/2.0 NW_024969616.1 2378897 2439753 + uncharacterized LOC107436691 aug3.g11765 LOC107436691 0
14 LOC107438714 Ptep1.0/2.0 NW_024970015.1 652540 747387 + transcriptional activator cubitus interruptus-like aug3.g13321 LOC107438714 0
15 LOC107455121 Ptep1.0/2.0 NW_024969752.1 5130489 5263483 + tyrosine-protein phosphatase 99A aug3.g6819,aug3.g6820 LOC107455121 0
16 LOC107449508 Ptep1.0/2.0 NW_024970345.1 11826 54485 - histone H2A.Z-specific chaperone CHZ1 aug3.g15449 LOC107449508 0
17 LOC107444121 Ptep1.0/2.0 NW_024969702.1 163730 402976 + uncharacterized LOC107444121 aug3.g17638 LOC107444121 0
18 LOC107437911 Ptep1.0/2.0 NW_024969660.1 1275804 1297309 + serine protease 27 aug3.g12644 LOC107437911 0
19 LOC107452617 Ptep1.0/2.0 NW_024969646.1 1511462 1596907 - G protein-coupled receptor kinase 2 aug3.g279 LOC107452617 0
20 LOC122273574 Ptep1.0/2.0 NW_024977316.1 128 1427 + serine protease 27-like aug3.g12644 NA 0
21 LOC107436894 Ptep1.0/2.0 NW_024969612.1 1030321 1221533 + zinc finger protein rotund aug3.g394 LOC107436894 0
22 LOC107454760 Ptep1.0/2.0 NW_024969730.1 633181 756431 - ankyrin repeat domain-containing protein 6 aug3.g24117 LOC107454760 0
23 LOC107457539 Ptep1.0/2.0 NW_024969659.1 595765 831003 + zinc finger homeobox protein 3 aug3.g11268 LOC107457539 0
24 LOC107440894 Ptep1.0/2.0 NW_024969752.1 1800 34134 + latrophilin Cirl aug3.g56 LOC107440894 0
25 LOC107451394 Ptep1.0/2.0 NW_024970213.1 343828 437631 - frizzled-5 aug3.g4009 LOC107451394 0
26 LOC107451685 Ptep1.0/2.0 NW_024969853.1 177887 310356 - roundabout homolog 3 aug3.g10604 LOC107451685 0
27 LOC107436350 Ptep1.0/2.0 NW_024970327.1 158464 317416 + glypican-6 aug3.g11833,aug3.g11486 LOC107436350 0
28 LOC107451211 Ptep1.0/2.0 NW_024969611.1 2052284 2349554 - ephrin type-B receptor 2 aug3.g3879 LOC107451211 0
29 LOC107451631 Ptep1.0/2.0 NW_024970632.1 91730 123570 + protein odd-skipped-related 2 aug3.g21549,aug3.g17123 LOC107451631 0
30 LOC107437115 Ptep1.0/2.0 NW_024969780.1 1611276 1705234 - one cut domain family member 2 aug3.g26177 LOC107437115 0
31 LOC107445468 Ptep1.0/2.0 NW_024971176.1 49908 122104 - elongation factor 1-beta aug3.g18569 LOC107445468 0
32 LOC107444578 Ptep1.0/2.0 NW_024969761.1 91499 161185 - amphiphysin aug3.g17965,aug3.g17964 LOC107444578 0
33 LOC107441868 Ptep1.0/2.0 NW_024970214.1 219176 476989 + uncharacterized LOC107441868 aug3.g27457,aug3.g10400 LOC107441868 0
34 LOC107449384 Ptep1.0/2.0 NW_024971878.1 4741 23960 + 60S ribosomal protein L9 aug3.g20716 LOC107449384 0
35 LOC107443696 Ptep1.0/2.0 NW_024970028.1 222440 238717 + protein snail homolog Sna aug3.g416,aug3.g417 LOC107443696 0
36 LOC107452507 Ptep1.0/2.0 NW_024970469.1 4849 229051 + vacuolar protein sorting-associated protein 13B aug3.g4797 LOC107452507 0
37 LOC107438957 Ptep1.0/2.0 NW_024969752.1 3152627 3168121 + uncharacterized LOC107438957 aug3.g13486 LOC107438957 0
38 LOC107453668 Ptep1.0/2.0 NW_024969708.1 1440203 1481885 + transcription factor E2F6 aug3.g5678,aug3.g5679,aug3.g5677 LOC107453668 0
39 LOC107439058 Ptep1.0/2.0 NW_024971146.1 12939 94546 + regulator of G-protein signaling 12 aug3.g26650,aug3.g24025 LOC107439058 0
40 LOC107452612 Ptep1.0/2.0 NW_024969646.1 2491603 2626474 - lysine-specific demethylase 6A aug3.g260 LOC107452612 0
41 LOC107448332 Ptep1.0/2.0 NW_024969803.1 2120247 2158427 - plasminogen activator inhibitor 1 RNA-binding protein aug3.g13 LOC107448332 0
42 LOC107447334 Ptep1.0/2.0 NW_024969674.1 31842 42010 + elongation factor 1-alpha aug3.g1688 LOC107447334 0
43 LOC107445331 Ptep1.0/2.0 NW_024970727.1 117609 196032 + KN motif and ankyrin repeat domain-containing protein 1 aug3.g18477,aug3.g18476 LOC107445331 0
44 LOC107456864 Ptep1.0/2.0 NW_024969914.1 23567 109354 - exonuclease GOR-like aug3.g18504,aug3.g1256 LOC107456864 0
45 LOC107450063 Ptep1.0/2.0 NW_024969698.1 603238 707119 + homeobox protein Meis1 aug3.g3111 LOC107450063 0
46 LOC107457559 Ptep1.0/2.0 NW_024970001.1 320490 347891 + MIP18 family protein galla-2 aug3.g25932 LOC107457559 0
47 LOC107436358 Ptep1.0/2.0 NW_024969815.1 644726 725669 + fasciclin-2 aug3.g11491 LOC107436358 0
48 LOC107443758 Ptep1.0/2.0 NW_024969706.1 1741270 1778310 - transcription factor AP-4 aug3.g424 LOC107443758 0
49 LOC107446658 Ptep1.0/2.0 NW_024969898.1 5033947 5085649 + la-related protein 1 aug3.g7584 LOC107446658 0
50 LOC107454852 Ptep1.0/2.0 NW_024970251.1 217918 282398 - serine/threonine-protein phosphatase 6 regulatory subunit 3 aug3.g6606 LOC107454852 0
51 LOC107440707 Ptep1.0/2.0 NW_024969921.1 967259 1043762 - homeobox protein Mix.2-like aug3.g27124 LOC107440707 0
52 LOC107451508 Ptep1.0/2.0 NW_024969916.1 380110 541420 - uncharacterized LOC107451508 aug3.g4076 LOC107451508 0
53 LOC107443554 Ptep1.0/2.0 NW_024969702.1 2717348 2792633 + protein Fe65 homolog aug3.g17308 LOC107443554 0
54 LOC107448365 Ptep1.0/2.0 NW_024970018.1 10237 54679 + DNA mismatch repair protein Msh6 aug3.g2173 LOC107448365 0
55 LOC107438125 Ptep1.0/2.0 NW_024969793.1 218552 258881 - fructose-2,6-bisphosphatase TIGAR aug3.g26396 LOC107438125 0
56 LOC107452116 Ptep1.0/2.0 NW_024969821.1 815183 870458 + transcription factor 12 aug3.g4534 LOC107452116 0
57 LOC107450096 Ptep1.0/2.0 NW_024969801.1 2449227 2502775 + sodium- and chloride-dependent glycine transporter 1 aug3.g15542 LOC107450096 0
58 LOC107450033 Ptep1.0/2.0 NW_024969620.1 73575 233208 + protein pangolin, isoforms A/H/I/S aug3.g10490,aug3.g18357 LOC107450033 0
59 LOC107440837 Ptep1.0/2.0 NW_024970477.1 211401 321962 - glutamate synthase [NADH] aug3.g14860,aug3.g14861 LOC107440837 0
60 LOC107446115 Ptep1.0/2.0 NW_024970281.1 10697 82354 - extracellular sulfatase Sulf-1 aug3.g18939 LOC107446115 0
61 LOC110281924 Ptep1.0/2.0 NW_024969777.1 469843 612682 + triadin aug3.g6466,aug3.g6465 LOC110281924 0
62 LOC107437527 Ptep1.0/2.0 NW_024969708.1 4394411 4434811 - uncharacterized LOC107437527 aug3.g26272 LOC107437527 0
63 LOC107451048 Ptep1.0/2.0 NW_024970106.1 3460582 3512228 + ubinuclein-2 aug3.g15662 LOC107451048 0
64 LOC107443911 Ptep1.0/2.0 NW_024970165.1 417009 611387 + plexin-B aug3.g573 LOC107443911 0
65 LOC107437400 Ptep1.0/2.0 NW_024970116.1 498885 549784 - histone-lysine N-methyltransferase, H3 lysine-79 specific aug3.g26245 LOC107437400 0
66 LOC107448987 Ptep1.0/2.0 NW_024970718.1 9668 94428 + putative oxidoreductase GLYR1 aug3.g2517 LOC107448987 0
67 LOC107449746 Ptep1.0/2.0 NW_024970266.1 230577 312246 - nuclear receptor subfamily 2 group F member 1-A aug3.g2915 LOC107449746 0
68 LOC107449517 Ptep1.0/2.0 NW_024970258.1 357064 370211 - protein PBDC1 aug3.g15446 LOC107449517 0
69 LOC107443630 Ptep1.0/2.0 NW_024969977.1 485131 614199 + uncharacterized LOC107443630 aug3.g483 LOC107443630 0
70 LOC107456288 Ptep1.0/2.0 NW_024969687.1 1771228 1793639 - isocitrate dehydrogenase [NADP] cytoplasmic aug3.g8458 LOC107456288 0
71 LOC107448371 Ptep1.0/2.0 NW_024970018.1 66671 87325 - UPF0488 protein C8orf33 homolog aug3.g2174 LOC107448371 0
72 LOC107450095 Ptep1.0/2.0 NW_024969801.1 1838760 2012911 - uncharacterized LOC107450095 aug3.g15547 LOC107450095 0
73 LOC107457339 Ptep1.0/2.0 NW_024969652.1 669616 715278 + putative ATP-dependent RNA helicase Pl10 aug3.g11094,aug3.g11095,aug3.g11093 LOC107457339,LOC107457340 0
74 LOC107449513 Ptep1.0/2.0 NW_024970258.1 422720 456454 - probable protein phosphatase 2C 6 aug3.g15448 LOC107449513 0
75 LOC107438136 Ptep1.0/2.0 NW_024969793.1 624101 663633 + heat shock 70 kDa protein 4 aug3.g26409,aug3.g26410 LOC107438136 0
76 LOC107444194 Ptep1.0/2.0 NW_024972424.1 3458 23033 + zinc finger protein 658B aug3.g9387,aug3.g27551 LOC107444194 7e-130
77 LOC107454980 Ptep1.0/2.0 NW_024970366.1 184317 203493 - uncharacterized LOC107454980 aug3.g6707 LOC107454980 0
78 LOC107438760 Ptep1.0/2.0 NW_024970266.1 3014 35987 + RING finger protein 150 aug3.g13351 LOC107438760 0
79 LOC107437110 Ptep1.0/2.0 NW_024969780.1 1967657 2006091 + uncharacterized LOC107437110 aug3.g26173 LOC107437110 0
80 LOC107445896 Ptep1.0/2.0 NW_024971158.1 3806 69131 + 7SK snRNA methylphosphate capping enzyme aug3.g18835 LOC107445896 0
81 LOC107452997 Ptep1.0/2.0 NW_024970787.1 177525 279012 + F-box/WD repeat-containing protein 1A aug3.g5127 LOC107452997 0
82 LOC107447251 Ptep1.0/2.0 NW_024971378.1 36179 91958 - protein O-mannosyl-transferase TMTC4 aug3.g19638 LOC107447251 0
83 LOC107450605 Ptep1.0/2.0 NW_024972431.1 75653 146675 + splicing factor 3B subunit 3 aug3.g21248,aug3.g20398 LOC107450605 0
84 LOC107437476 Ptep1.0/2.0 NW_024970425.1 9392 84623 + trafficking protein particle complex subunit 13 aug3.g12346 LOC107437476 0
85 LOC107449498 Ptep1.0/2.0 NW_024970258.1 99236 152160 + serine proteinase stubble aug3.g15440 LOC107449498 0
86 LOC107448564 Ptep1.0/2.0 NW_024970280.1 2 60532 + uncharacterized LOC107448564 aug3.g2305 LOC107448564 0
87 LOC107446987 Ptep1.0/2.0 NW_024970343.1 60817 193526 + DDB1- and CUL4-associated factor 1 aug3.g1575 LOC107446987 0
88 LOC107437002 Ptep1.0/2.0 NW_024971413.1 64921 188667 + adhesion G protein-coupled receptor L1 aug3.g9493 LOC107437002 0
89 LOC107457489 Ptep1.0/2.0 NW_024969800.1 282420 321720 + anoctamin-10 aug3.g25920 LOC107457489 0
90 LOC107455082 Ptep1.0/2.0 NW_024969651.1 1558495 1615148 + ethanolaminephosphotransferase 1 aug3.g24993 LOC107455082 0
91 LOC107451025 Ptep1.0/2.0 NW_024969755.1 1124495 1147839 - mitoferrin-2 aug3.g225 LOC107451025 0
92 LOC107455895 Ptep1.0/2.0 NW_024969600.1 234708 278641 + transmembrane 9 superfamily member 4 aug3.g8121 LOC107455895 0
93 LOC107448256 Ptep1.0/2.0 NW_024971546.1 5252 85411 + helicase ARIP4 aug3.g20218 LOC107448256 0
94 LOC107440424 Ptep1.0/2.0 NW_024970337.1 44274 244532 + CCR4-NOT transcription complex subunit 6-like aug3.g27048 LOC107440424 0
95 LOC107450690 Ptep1.0/2.0 NW_024970489.1 54137 109046 + uncharacterized LOC107450690 aug3.g25707 LOC107450690 0
96 LOC107453499 Ptep1.0/2.0 NW_024969603.1 1608727 1711074 - zinc finger homeobox protein 4 aug3.g25763 LOC107453499 0
97 LOC107451030 Ptep1.0/2.0 NW_024969755.1 393287 429793 - proton channel OtopLc aug3.g211 LOC107451030 0
98 LOC107455719 Ptep1.0/2.0 NW_024970987.1 11790 155147 - AT-rich interactive domain-containing protein 2 aug3.g7986 LOC107455719 0
99 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12