Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st5l | GeneID(LOC) list: cluster_6


word count=46
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107444265 Ptep1.0/2.0 NW_024971348.1 1552 13304 + noggin-2 aug3.g17729 LOC107444265 0
2 LOC107448880 Ptep1.0/2.0 NW_024969637.1 1679705 1993013 + endothelial transcription factor GATA-2-like aug3.g20514 LOC107448880 0
3 LOC107450977 Ptep1.0/2.0 NW_024969876.1 790959 800336 + T-box transcription factor TBX3 aug3.g3746 LOC107450977 0
4 LOC107437748 Ptep1.0/2.0 NW_024969659.1 2396380 2411412 - adipolin aug3.g12543 LOC107437748 0
5 LOC107443591 Ptep1.0/2.0 NW_024970881.1 73128 111638 - BMP and activin membrane-bound inhibitor homolog aug3.g17346 LOC107443591 0
6 LOC107451864 Ptep1.0/2.0 NW_024971353.1 13497 61893 + gonadotropin-releasing hormone II receptor aug3.g4360 LOC107451864 0
7 LOC107437564 Ptep1.0/2.0 NW_024970114.1 1438948 1477637 - uncharacterized LOC107437564 aug3.g12420 LOC107437564 0
8 LOC107440570 Ptep1.0/2.0 NW_024969869.1 351769 800872 + uncharacterized LOC107440570 aug3.g14649,aug3.g10456 LOC107440570 0
9 LOC107446080 Ptep1.0/2.0 NW_024969727.1 155592 168820 - cyclin-dependent kinase 20 aug3.g1238 LOC107446080 0
10 LOC107450100 Ptep1.0/2.0 NW_024969801.1 3126345 3185727 + homeobox protein DLX-6-like aug3.g15531 LOC107450100 0
11 LOC107437772 Ptep1.0/2.0 NW_024970300.1 148355 204300 + MICAL-like protein 2 aug3.g12570 LOC107437772 0
12 LOC107447970 Ptep1.0/2.0 NW_024969607.1 782992 812236 + aurora kinase C aug3.g15230 LOC107447970 0
13 LOC107452006 Ptep1.0/2.0 NW_024969863.1 833764 911467 - transcription factor AP-2-beta aug3.g23531 LOC107452006 0
14 LOC107456830 Ptep1.0/2.0 NW_024969653.1 33896 90683 - serine-rich adhesin for platelets aug3.g8856 LOC107456830 0
15 LOC107436894 Ptep1.0/2.0 NW_024969612.1 1030321 1221533 + zinc finger protein rotund aug3.g394 LOC107436894 0
16 LOC107441660 Ptep1.0/2.0 NW_024970650.1 7267 100342 - unconventional myosin-Ie aug3.g9845,aug3.g9846,aug3.g22123 LOC107441660 0
17 LOC107449611 Ptep1.0/2.0 NW_024969901.1 310205 442919 - protein dachsous aug3.g2859 LOC107449611 0
18 LOC107440453 Ptep1.0/2.0 NW_024969955.1 310854 360310 + histone acetyltransferase KAT5 aug3.g14550 LOC107440453 0
19 LOC107450335 Ptep1.0/2.0 NW_024969819.1 2114835 2277923 + zinc finger protein basonuclin-2 aug3.g3273 LOC107450335 0
20 LOC107437034 Ptep1.0/2.0 NW_024970136.1 374501 413627 + Fanconi anemia group M protein aug3.g26151 LOC107437034 0
21 LOC107456104 Ptep1.0/2.0 NW_024970773.1 124949 140750 + uncharacterized LOC107456104 aug3.g10934,aug3.g18321 LOC107456104 0
22 LOC107442925 Ptep1.0/2.0 NW_024970173.1 410777 473979 + bone morphogenetic protein 4-like aug3.g16926 LOC107442925 0
23 LOC107450033 Ptep1.0/2.0 NW_024969620.1 73575 233208 + protein pangolin, isoforms A/H/I/S aug3.g10490,aug3.g18357 LOC107450033 0
24 LOC107454377 Ptep1.0/2.0 NW_024969612.1 1643591 1724467 + bone morphogenetic protein receptor type-2-like aug3.g380,aug3.g379,aug3.g22126 LOC107436470,LOC107454377 0
25 LOC107456960 Ptep1.0/2.0 NW_024969952.1 625314 668845 + suppressor of cytokine signaling 2 aug3.g25340,aug3.g25341 LOC107456960 0
26 LOC107436350 Ptep1.0/2.0 NW_024970327.1 158464 317416 + glypican-6 aug3.g11833,aug3.g11486 LOC107436350 0
27 LOC107451488 Ptep1.0/2.0 NW_024970373.1 188812 205045 - ubiquitin-protein ligase E3A aug3.g4064 LOC107451488 0
28 LOC107443668 Ptep1.0/2.0 NW_024970586.1 283151 376682 - metalloprotease TIKI2 aug3.g17382,aug3.g18676 LOC107443668 0
29 LOC107440157 Ptep1.0/2.0 NW_024970490.1 4863 141355 + zinc finger protein 423 aug3.g14296 LOC107440157 0
30 LOC107455774 Ptep1.0/2.0 NW_024969995.1 194112 220878 - patatin-like phospholipase domain-containing protein 2 aug3.g8015 LOC107455774 0
31 LOC107443364 Ptep1.0/2.0 NW_024970254.1 5297 27059 + uncharacterized LOC107443364 aug3.g17172 LOC107443364 0
32 LOC107453597 Ptep1.0/2.0 NW_024969905.1 484247 573318 + fibroblast growth factor 8 aug3.g5611 LOC107453597 0
33 LOC107438301 Ptep1.0/2.0 NW_024970082.1 78025 165064 + zinc finger protein 236 aug3.g12961 LOC107438301 0
34 LOC107436691 Ptep1.0/2.0 NW_024969616.1 2378897 2439753 + uncharacterized LOC107436691 aug3.g11765 LOC107436691 0
35 LOC107451348 Ptep1.0/2.0 NW_024970681.1 4220 19077 + uncharacterized LOC107451348 LOC107451348 0
36 LOC107438714 Ptep1.0/2.0 NW_024970015.1 652540 747387 + transcriptional activator cubitus interruptus-like aug3.g13321 LOC107438714 0
37 LOC107448645 Ptep1.0/2.0 NW_024969804.1 48527 119773 - transcription factor Sp9 aug3.g2333 LOC107448645 0
38 LOC107445501 Ptep1.0/2.0 NW_024969819.1 617958 783840 - transducin-like enhancer protein 4 aug3.g25605,aug3.g25606 LOC107445501 0
39 LOC107437559 Ptep1.0/2.0 NW_024970016.1 448918 476167 - cytoplasmic polyadenylation element-binding protein 1 aug3.g12413 LOC107437559 0
40 LOC107437743 Ptep1.0/2.0 NW_024969659.1 2277997 2288054 - programmed cell death protein 5-like aug3.g18027 LOC107437743 0
41 LOC107438828 Ptep1.0/2.0 NW_024969620.1 1842791 1869081 - protein mothers against dpp aug3.g26552 LOC107438828 0
42 LOC107444082 Ptep1.0/2.0 NW_024969971.1 82243 183393 - homeodomain-interacting protein kinase 2 aug3.g619,aug3.g618 LOC107444082 0
43 LOC107456088 Ptep1.0/2.0 NW_024971649.1 3049 50280 + iroquois-class homeodomain protein IRX-6 aug3.g8295 LOC107456088 0
44 LOC107444058 Ptep1.0/2.0 NW_024969988.1 655739 696415 - putative sodium-dependent multivitamin transporter aug3.g7417 LOC107444058 0
45 LOC107438587 Ptep1.0/2.0 NW_024970978.1 136937 142783 + uncharacterized LOC107438587 aug3.g13211 LOC107438587 1e-126
46 LOC107449016 Ptep1.0/2.0 NW_024969596.1 1405565 1452832 + uncharacterized LOC107449016 aug3.g2534,aug3.g2533 LOC107449016 0
46 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12