Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st5l | GeneID(LOC) list: cluster_8


word count=108
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107436847 Ptep1.0/2.0 NW_024969813.1 635864 695250 + T-box transcription factor TBX20-like aug3.g11865 LOC107436847 0
2 LOC107456035 Ptep1.0/2.0 NW_024970085.1 525831 557278 + homeobox protein B-H1 aug3.g8250 LOC107456035 0
3 LOC107437002 Ptep1.0/2.0 NW_024971413.1 64921 188667 + adhesion G protein-coupled receptor L1 aug3.g9493 LOC107437002 0
4 LOC107443696 Ptep1.0/2.0 NW_024970028.1 222440 238717 + protein snail homolog Sna aug3.g416,aug3.g417 LOC107443696 0
5 LOC107437305 Ptep1.0/2.0 NW_024970197.1 359527 396131 - zinc finger protein ZIC 4-like aug3.g12202 LOC107437305 0
6 LOC107455686 Ptep1.0/2.0 NW_024969831.1 512171 545973 + homeobox protein Hox-A1-like aug3.g7954 LOC107455686 0
7 LOC107455688 Ptep1.0/2.0 NW_024969831.1 408849 511729 - uncharacterized LOC107455688 LOC107455688 0
8 LOC107451579 Ptep1.0/2.0 NW_024970106.1 1155904 1253584 + E3 ubiquitin-protein ligase Rnf220 aug3.g4121 LOC107451579 0
9 LOC107450100 Ptep1.0/2.0 NW_024969801.1 3126345 3185727 + homeobox protein DLX-6-like aug3.g15531 LOC107450100 0
10 LOC107450101 Ptep1.0/2.0 NW_024969801.1 1474305 1532958 + dendritic arbor reduction protein 1 aug3.g15550 LOC107450101 0
11 LOC107440240 Ptep1.0/2.0 NW_024970743.1 104190 175589 - protein patched-like aug3.g14374 LOC107440240 0
12 LOC107436125 Ptep1.0/2.0 NW_024970622.1 72266 157702 + protein gooseberry aug3.g11337 LOC107436125 0
13 LOC107443668 Ptep1.0/2.0 NW_024970586.1 283151 376682 - metalloprotease TIKI2 aug3.g17382,aug3.g18676 LOC107443668 0
14 LOC107456793 Ptep1.0/2.0 NW_024969813.1 1014111 1123993 + T-box transcription factor TBX20 aug3.g8837 LOC107456793 0
15 LOC107453597 Ptep1.0/2.0 NW_024969905.1 484247 573318 + fibroblast growth factor 8 aug3.g5611 LOC107453597 0
16 LOC107436358 Ptep1.0/2.0 NW_024969815.1 644726 725669 + fasciclin-2 aug3.g11491 LOC107436358 0
17 LOC107453771 Ptep1.0/2.0 NW_024969727.1 973540 1095466 - SPARC-related modular calcium-binding protein 2 aug3.g5781 LOC107453771 0
18 LOC107436350 Ptep1.0/2.0 NW_024970327.1 158464 317416 + glypican-6 aug3.g11833,aug3.g11486 LOC107436350 0
19 LOC107440157 Ptep1.0/2.0 NW_024970490.1 4863 141355 + zinc finger protein 423 aug3.g14296 LOC107440157 0
20 LOC107437748 Ptep1.0/2.0 NW_024969659.1 2396380 2411412 - adipolin aug3.g12543 LOC107437748 0
21 LOC107446842 Ptep1.0/2.0 NW_024969795.1 332945 409367 + uncharacterized LOC107446842 aug3.g1487,aug3.g1486 LOC107446842 0
22 LOC107440894 Ptep1.0/2.0 NW_024969752.1 1800 34134 + latrophilin Cirl aug3.g56 LOC107440894 0
23 LOC107457539 Ptep1.0/2.0 NW_024969659.1 595765 831003 + zinc finger homeobox protein 3 aug3.g11268 LOC107457539 0
24 LOC107453668 Ptep1.0/2.0 NW_024969708.1 1440203 1481885 + transcription factor E2F6 aug3.g5678,aug3.g5679,aug3.g5677 LOC107453668 0
25 LOC107457189 Ptep1.0/2.0 NW_024971022.1 57223 104397 + homeobox protein OTX2-A-like aug3.g9172 LOC107457189 0
26 LOC107450096 Ptep1.0/2.0 NW_024969801.1 2449227 2502775 + sodium- and chloride-dependent glycine transporter 1 aug3.g15542 LOC107450096 0
27 LOC107449384 Ptep1.0/2.0 NW_024971878.1 4741 23960 + 60S ribosomal protein L9 aug3.g20716 LOC107449384 0
28 LOC107453587 Ptep1.0/2.0 NW_024970132.1 304838 317290 - L-sorbose 1-dehydrogenase aug3.g5600 LOC107453587 0
29 LOC107451394 Ptep1.0/2.0 NW_024970213.1 343828 437631 - frizzled-5 aug3.g4009 LOC107451394 0
30 LOC107444058 Ptep1.0/2.0 NW_024969988.1 655739 696415 - putative sodium-dependent multivitamin transporter aug3.g7417 LOC107444058 0
31 LOC122270927 Ptep1.0/2.0 NW_024969635.1 1163024 1288300 + uncharacterized LOC122270927 aug3.g142 NA 0
32 LOC107450063 Ptep1.0/2.0 NW_024969698.1 603238 707119 + homeobox protein Meis1 aug3.g3111 LOC107450063 0
33 LOC107453499 Ptep1.0/2.0 NW_024969603.1 1608727 1711074 - zinc finger homeobox protein 4 aug3.g25763 LOC107453499 0
34 LOC107455121 Ptep1.0/2.0 NW_024969752.1 5130489 5263483 + tyrosine-protein phosphatase 99A aug3.g6819,aug3.g6820 LOC107455121 0
35 LOC107439560 Ptep1.0/2.0 NW_024969640.1 689507 960935 - homeobox protein Meis2 aug3.g13867,aug3.g13868 LOC107439560 0
36 LOC107437115 Ptep1.0/2.0 NW_024969780.1 1611276 1705234 - one cut domain family member 2 aug3.g26177 LOC107437115 0
37 LOC107453535 Ptep1.0/2.0 NW_024972553.1 2082 21509 + uncharacterized LOC107453535 aug3.g23922,aug3.g10734 LOC107453535 2e-152
38 LOC107449508 Ptep1.0/2.0 NW_024970345.1 11826 54485 - histone H2A.Z-specific chaperone CHZ1 aug3.g15449 LOC107449508 0
39 LOC107449667 Ptep1.0/2.0 NW_024970623.1 57574 89313 - centromere-associated protein E aug3.g10461 LOC107449667 0
40 LOC107456830 Ptep1.0/2.0 NW_024969653.1 33896 90683 - serine-rich adhesin for platelets aug3.g8856 LOC107456830 0
41 LOC107446082 Ptep1.0/2.0 NW_024969638.1 239479 381182 + sodium- and chloride-dependent glycine transporter 1 aug3.g1218 LOC107446082 0
42 LOC107454980 Ptep1.0/2.0 NW_024970366.1 184317 203493 - uncharacterized LOC107454980 aug3.g6707 LOC107454980 0
43 LOC107444578 Ptep1.0/2.0 NW_024969761.1 91499 161185 - amphiphysin aug3.g17965,aug3.g17964 LOC107444578 0
44 LOC107446987 Ptep1.0/2.0 NW_024970343.1 60817 193526 + DDB1- and CUL4-associated factor 1 aug3.g1575 LOC107446987 0
45 LOC107454167 Ptep1.0/2.0 NW_024995499.1 704 1065 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
45 LOC107454167_1 Ptep1.0/2.0 NW_024969641.1 594712 690101 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
46 LOC107438242 Ptep1.0/2.0 NW_024970132.1 546577 625801 - growth arrest-specific protein 2 aug3.g12936 LOC107438242 0
47 LOC107439046 Ptep1.0/2.0 NW_024969672.1 778242 1093632 + homeobox protein extradenticle aug3.g13538,aug3.g27748,aug3.g27747 LOC107439046 0
48 LOC107442231 Ptep1.0/2.0 NW_024969650.1 503170 644233 + uncharacterized LOC107442231 aug3.g27564,aug3.g20669,aug3.g20671 LOC107442231 0
49 LOC107457559 Ptep1.0/2.0 NW_024970001.1 320490 347891 + MIP18 family protein galla-2 aug3.g25932 LOC107457559 0
50 LOC107443758 Ptep1.0/2.0 NW_024969706.1 1741270 1778310 - transcription factor AP-4 aug3.g424 LOC107443758 0
51 LOC122268403 Ptep1.0/2.0 NW_024969646.1 3907013 3947979 - rRNA biogenesis protein rrp5-like aug3.g13669 NA 0
52 LOC107438760 Ptep1.0/2.0 NW_024970266.1 3014 35987 + RING finger protein 150 aug3.g13351 LOC107438760 0
53 LOC107445331 Ptep1.0/2.0 NW_024970727.1 117609 196032 + KN motif and ankyrin repeat domain-containing protein 1 aug3.g18477,aug3.g18476 LOC107445331 0
54 LOC107448332 Ptep1.0/2.0 NW_024969803.1 2120247 2158427 - plasminogen activator inhibitor 1 RNA-binding protein aug3.g13 LOC107448332 0
55 LOC107453502 Ptep1.0/2.0 NW_024969983.1 614801 674625 + uncharacterized LOC107453502 aug3.g23827 LOC107453502 0
56 LOC107456288 Ptep1.0/2.0 NW_024969687.1 1771228 1793639 - isocitrate dehydrogenase [NADP] cytoplasmic aug3.g8458 LOC107456288 0
57 LOC107454759 Ptep1.0/2.0 NW_024969730.1 984690 1147042 - LARGE xylosyl- and glucuronyltransferase 1 aug3.g24112 LOC107454759 0
58 LOC107443336 Ptep1.0/2.0 NW_024969752.1 3631075 3920034 + microtubule-actin cross-linking factor 1 aug3.g27926,aug3.g27927,aug3.g6087 LOC107443336,LOC107454188 0
59 LOC107457313 Ptep1.0/2.0 NW_024969787.1 743818 747270 - transcription factor Sox-2 aug3.g11061 LOC107457313 0
60 LOC107445501 Ptep1.0/2.0 NW_024969819.1 617958 783840 - transducin-like enhancer protein 4 aug3.g25605,aug3.g25606 LOC107445501 0
61 LOC107452617 Ptep1.0/2.0 NW_024969646.1 1511462 1596907 - G protein-coupled receptor kinase 2 aug3.g279 LOC107452617 0
62 LOC107452116 Ptep1.0/2.0 NW_024969821.1 815183 870458 + transcription factor 12 aug3.g4534 LOC107452116 0
63 LOC107438136 Ptep1.0/2.0 NW_024969793.1 624101 663633 + heat shock 70 kDa protein 4 aug3.g26409,aug3.g26410 LOC107438136 0
64 LOC107452612 Ptep1.0/2.0 NW_024969646.1 2491603 2626474 - lysine-specific demethylase 6A aug3.g260 LOC107452612 0
65 LOC107450095 Ptep1.0/2.0 NW_024969801.1 1838760 2012911 - uncharacterized LOC107450095 aug3.g15547 LOC107450095 0
66 LOC107450690 Ptep1.0/2.0 NW_024970489.1 54137 109046 + uncharacterized LOC107450690 aug3.g25707 LOC107450690 0
67 LOC107452215 Ptep1.0/2.0 NW_024969686.1 1262457 1410355 - Krueppel-like factor 7 aug3.g4601 LOC107452215 0
68 LOC107443630 Ptep1.0/2.0 NW_024969977.1 485131 614199 + uncharacterized LOC107443630 aug3.g483 LOC107443630 0
69 LOC122271545 Ptep1.0/2.0 NW_024970920.1 42550 50805 + uncharacterized LOC122271545 NA 0
70 LOC107441771 Ptep1.0/2.0 NW_024969625.1 206169 594447 + protein tiptop aug3.g25516 LOC107441771 0
71 LOC107439303 Ptep1.0/2.0 NW_024969993.1 200669 276532 + hemicentin-2 aug3.g13686 LOC107439303 0
72 LOC107449700 Ptep1.0/2.0 NW_024969898.1 965052 1506590 - zinc finger protein rotund aug3.g20887,aug3.g1991 LOC107449700,LOC107456696 0
73 LOC107445081 Ptep1.0/2.0 NW_024971236.1 59452 102244 + SEC14-like protein 2 aug3.g18290 LOC107445081 0
74 LOC107437400 Ptep1.0/2.0 NW_024970116.1 498885 549784 - histone-lysine N-methyltransferase, H3 lysine-79 specific aug3.g26245 LOC107437400 0
75 LOC107446658 Ptep1.0/2.0 NW_024969898.1 5033947 5085649 + la-related protein 1 aug3.g7584 LOC107446658 0
76 LOC107438758 Ptep1.0/2.0 NW_024970060.1 453865 533783 - epidermal growth factor receptor aug3.g13345,aug3.g13344 LOC107438758 0
77 LOC107456864 Ptep1.0/2.0 NW_024969914.1 23567 109354 - exonuclease GOR-like aug3.g18504,aug3.g1256 LOC107456864 0
78 LOC107449383 Ptep1.0/2.0 NW_024970180.1 1576 29508 + SPRY domain-containing SOCS box protein 3 aug3.g2732 LOC107449383 0
79 LOC107446025 Ptep1.0/2.0 NW_024970649.1 158573 252372 - uncharacterized protein CG43867 aug3.g1216 LOC107446025 0
80 LOC107436691 Ptep1.0/2.0 NW_024969616.1 2378897 2439753 + uncharacterized LOC107436691 aug3.g11765 LOC107436691 0
81 LOC107437527 Ptep1.0/2.0 NW_024969708.1 4394411 4434811 - uncharacterized LOC107437527 aug3.g26272 LOC107437527 0
82 LOC107445468 Ptep1.0/2.0 NW_024971176.1 49908 122104 - elongation factor 1-beta aug3.g18569 LOC107445468 0
83 LOC122271846 Ptep1.0/2.0 NW_024971213.1 5 17463 - cell cycle checkpoint protein RAD17-like aug3.g11800 NA 0
84 LOC107452507 Ptep1.0/2.0 NW_024970469.1 4849 229051 + vacuolar protein sorting-associated protein 13B aug3.g4797 LOC107452507 0
85 LOC107437476 Ptep1.0/2.0 NW_024970425.1 9392 84623 + trafficking protein particle complex subunit 13 aug3.g12346 LOC107437476 0
86 LOC107448987 Ptep1.0/2.0 NW_024970718.1 9668 94428 + putative oxidoreductase GLYR1 aug3.g2517 LOC107448987 0
87 LOC107450601 Ptep1.0/2.0 NW_024969913.1 90916 162015 + uncharacterized LOC107450601 aug3.g3466,aug3.g3467,aug3.g25011 LOC107450601 0
88 LOC122272714 Ptep1.0/2.0 NW_024972588.1 13752 16016 - uncharacterized LOC122272714 NA 0
89 LOC107436894 Ptep1.0/2.0 NW_024969612.1 1030321 1221533 + zinc finger protein rotund aug3.g394 LOC107436894 0
90 LOC107447334 Ptep1.0/2.0 NW_024969674.1 31842 42010 + elongation factor 1-alpha aug3.g1688 LOC107447334 0
91 LOC107437471 Ptep1.0/2.0 NW_024969819.1 4212 34534 + uncharacterized LOC107437471 aug3.g12332,aug3.g20218 LOC107437471 0
92 LOC107448256 Ptep1.0/2.0 NW_024971546.1 5252 85411 + helicase ARIP4 aug3.g20218 LOC107448256 0
93 LOC107451335 Ptep1.0/2.0 NW_024970681.1 30507 68091 - fatty acid-binding protein aug3.g3973 LOC107451335 0
94 LOC107447087 Ptep1.0/2.0 NW_024971694.1 3304 39612 + eukaryotic translation initiation factor 4E type 3 aug3.g19544,aug3.g19543 LOC107447087 0
95 LOC107445694 Ptep1.0/2.0 NW_024969911.1 448052 571614 + unconventional myosin-Vb aug3.g9254,aug3.g6148,aug3.g21618 LOC107445694 0
96 LOC107448365 Ptep1.0/2.0 NW_024970018.1 10237 54679 + DNA mismatch repair protein Msh6 aug3.g2173 LOC107448365 0
97 LOC107454846 Ptep1.0/2.0 NW_024970597.1 135149 243858 - RNA-binding protein fusilli aug3.g10830 LOC107454846 0
98 LOC107445260 Ptep1.0/2.0 NW_024970998.1 11822 95325 + H(+)/Cl(-) exchange transporter 5 aug3.g18417,aug3.g17355 LOC107445260 0
99 LOC107450194 Ptep1.0/2.0 NW_024970128.1 502540 553252 - glucosidase 2 subunit beta aug3.g21121,aug3.g21122 LOC107450194 0
100 LOC107445773 Ptep1.0/2.0 NW_024970192.1 225589 482658 - single-stranded DNA-binding protein 3 aug3.g1165 LOC107445773 0
101 LOC107449517 Ptep1.0/2.0 NW_024970258.1 357064 370211 - protein PBDC1 aug3.g15446 LOC107449517 0
102 LOC107443554 Ptep1.0/2.0 NW_024969702.1 2717348 2792633 + protein Fe65 homolog aug3.g17308 LOC107443554 0
103 LOC107447770 Ptep1.0/2.0 NW_024970237.1 351543 412631 - cullin-1 aug3.g1917 LOC107447770 0
104 LOC107447775 Ptep1.0/2.0 NW_024969624.1 18601 38011 + uracil-DNA glycosylase aug3.g1916 LOC107447775 0
105 LOC107445973 Ptep1.0/2.0 NW_024969716.1 877125 894039 + uncharacterized LOC107445973 aug3.g18851 LOC107445973 0
106 LOC107445896 Ptep1.0/2.0 NW_024971158.1 3806 69131 + 7SK snRNA methylphosphate capping enzyme aug3.g18835 LOC107445896 0
107 LOC107451030 Ptep1.0/2.0 NW_024969755.1 393287 429793 - proton channel OtopLc aug3.g211 LOC107451030 0
108 LOC107436385 Ptep1.0/2.0 NW_024969665.1 718008 797350 - insulin-degrading enzyme aug3.g26017 LOC107436385 0
109 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12