Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st7 | GeneID(LOC) list: cluster_0


word count=105
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107450661 Ptep1.0/2.0 NW_024970076.1 528474 601609 - homeobox protein Hox-A5 aug3.g15606 LOC107450661 0
2 LOC107447506 Ptep1.0/2.0 NW_024969702.1 981666 1007149 + uncharacterized LOC107447506 LOC107447506 0
3 LOC107447606 Ptep1.0/2.0 NW_024971237.1 9352 67313 + palmitoleoyl-protein carboxylesterase notum1 aug3.g9270 LOC107447606 0
4 LOC107447497 Ptep1.0/2.0 NW_024969702.1 770388 810551 + uncharacterized LOC107447497 aug3.g1790 LOC107447497 0
5 LOC107438015 Ptep1.0/2.0 NW_024970324.1 150825 183689 - growth arrest-specific protein 1 aug3.g9575 LOC107438015 0
6 LOC122268913 Ptep1.0/2.0 NW_024969702.1 713233 766174 + uncharacterized LOC122268913 aug3.g1790 LOC107447497 1e-30
7 LOC107451685 Ptep1.0/2.0 NW_024969853.1 177887 310356 - roundabout homolog 3 aug3.g10604 LOC107451685 0
8 LOC107450357 Ptep1.0/2.0 NW_024969725.1 527726 648489 - uncharacterized LOC107450357 aug3.g3277 LOC107450357 0
9 LOC107454167 Ptep1.0/2.0 NW_024995499.1 704 1065 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
9 LOC107454167_1 Ptep1.0/2.0 NW_024969641.1 594712 690101 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
10 LOC107457180 Ptep1.0/2.0 NW_024969714.1 1023351 1149707 - protein jagged-1 aug3.g9162,aug3.g9161 LOC107457180 0
11 LOC107438732 Ptep1.0/2.0 NW_024969622.1 1361500 1374934 + somatomedin-B and thrombospondin type-1 domain-containing protein aug3.g26535 LOC107438732 0
12 LOC107447507 Ptep1.0/2.0 NW_024969702.1 530177 590436 - homeobox protein Hox-A5 aug3.g17640 LOC107447507 8e-149
13 LOC107446115 Ptep1.0/2.0 NW_024970281.1 10697 82354 - extracellular sulfatase Sulf-1 aug3.g18939 LOC107446115 0
14 LOC107453499 Ptep1.0/2.0 NW_024969603.1 1608727 1711074 - zinc finger homeobox protein 4 aug3.g25763 LOC107453499 0
15 LOC107444558 Ptep1.0/2.0 NW_024969661.1 1338004 1430226 - paired box protein Pax-5 aug3.g762 LOC107444558 0
16 LOC107451660 Ptep1.0/2.0 NW_024970846.1 24518 42153 - vitamin K-dependent protein C aug3.g4198 LOC107451660 0
17 LOC107451211 Ptep1.0/2.0 NW_024969611.1 2052284 2349554 - ephrin type-B receptor 2 aug3.g3879 LOC107451211 0
18 LOC107443946 Ptep1.0/2.0 NW_024970769.1 73366 90135 + extracellular serine/threonine protein kinase four-jointed-like aug3.g581 LOC107443946 0
19 LOC107442927 Ptep1.0/2.0 NW_024971052.1 33401 43140 + uncharacterized LOC107442927 LOC107442927 0
20 LOC107456088 Ptep1.0/2.0 NW_024971649.1 3049 50280 + iroquois-class homeodomain protein IRX-6 aug3.g8295 LOC107456088 0
21 LOC107450899 Ptep1.0/2.0 NW_024969598.1 1524043 1618053 + sal-like protein 1 aug3.g3675 LOC107450899 0
22 LOC107444120 Ptep1.0/2.0 NW_024969702.1 254507 471515 - homeobox protein Hox-C4 aug3.g17637,aug3.g17639 LOC107444120 0
23 LOC107436894 Ptep1.0/2.0 NW_024969612.1 1030321 1221533 + zinc finger protein rotund aug3.g394 LOC107436894 0
24 LOC107448079 Ptep1.0/2.0 NW_024969687.1 1185366 1275530 + putative epidermal cell surface receptor aug3.g20118 LOC107448079 0
25 LOC107436465 Ptep1.0/2.0 NW_024969927.1 663375 752696 - B-cell lymphoma/leukemia 11A aug3.g26043 LOC107436465 0
26 LOC107440619 Ptep1.0/2.0 NW_024970318.1 289854 377527 - ETS domain-containing protein Elk-1 aug3.g9766 LOC107440619 0
27 LOC107454760 Ptep1.0/2.0 NW_024969730.1 633181 756431 - ankyrin repeat domain-containing protein 6 aug3.g24117 LOC107454760 0
28 LOC107450063 Ptep1.0/2.0 NW_024969698.1 603238 707119 + homeobox protein Meis1 aug3.g3111 LOC107450063 0
29 LOC107456864 Ptep1.0/2.0 NW_024969914.1 23567 109354 - exonuclease GOR-like aug3.g18504,aug3.g1256 LOC107456864 0
30 LOC107444748 Ptep1.0/2.0 NW_024970651.1 124752 158939 - uncharacterized LOC107444748 aug3.g18068 LOC107444748 0
31 LOC107437755 Ptep1.0/2.0 NW_024971438.1 15552 47510 + cytochrome P450 3A8 aug3.g12552 LOC107437755 0
32 LOC107456104 Ptep1.0/2.0 NW_024970773.1 124949 140750 + uncharacterized LOC107456104 aug3.g10934,aug3.g18321 LOC107456104 0
33 LOC107457357 Ptep1.0/2.0 NW_024969595.1 852934 1109016 - tyrosine-protein kinase RYK aug3.g25882 LOC107457357 0
34 LOC107449043 Ptep1.0/2.0 NW_024970073.1 285888 290779 + toll-like receptor Tollo aug3.g2549 LOC107449043 0
35 LOC107449746 Ptep1.0/2.0 NW_024970266.1 230577 312246 - nuclear receptor subfamily 2 group F member 1-A aug3.g2915 LOC107449746 0
36 LOC107453559 Ptep1.0/2.0 NW_024970641.1 261643 275007 - uncharacterized LOC107453559 aug3.g5569 LOC107453559 0
37 LOC107445428 Ptep1.0/2.0 NW_024969822.1 115253 166067 - BMP and activin membrane-bound inhibitor homolog aug3.g18541 LOC107445428 0
38 LOC107436691 Ptep1.0/2.0 NW_024969616.1 2378897 2439753 + uncharacterized LOC107436691 aug3.g11765 LOC107436691 0
39 LOC107436358 Ptep1.0/2.0 NW_024969815.1 644726 725669 + fasciclin-2 aug3.g11491 LOC107436358 0
40 LOC107451394 Ptep1.0/2.0 NW_024970213.1 343828 437631 - frizzled-5 aug3.g4009 LOC107451394 0
41 LOC107448645 Ptep1.0/2.0 NW_024969804.1 48527 119773 - transcription factor Sp9 aug3.g2333 LOC107448645 0
42 LOC107436623 Ptep1.0/2.0 NW_024970548.1 149824 183056 - neuronal calcium sensor 1 aug3.g11709 LOC107436623 0
43 LOC107456525 Ptep1.0/2.0 NW_024969618.1 110060 125331 - delta-like protein 1 aug3.g25248 LOC107456525 0
44 LOC107454132 Ptep1.0/2.0 NW_024969759.1 369574 430014 - toll-like receptor Tollo aug3.g6063 LOC107454132 0
45 LOC107446080 Ptep1.0/2.0 NW_024969727.1 155592 168820 - cyclin-dependent kinase 20 aug3.g1238 LOC107446080 0
46 LOC107453771 Ptep1.0/2.0 NW_024969727.1 973540 1095466 - SPARC-related modular calcium-binding protein 2 aug3.g5781 LOC107453771 0
47 LOC107451579 Ptep1.0/2.0 NW_024970106.1 1155904 1253584 + E3 ubiquitin-protein ligase Rnf220 aug3.g4121 LOC107451579 0
48 LOC107437305 Ptep1.0/2.0 NW_024970197.1 359527 396131 - zinc finger protein ZIC 4-like aug3.g12202 LOC107437305 0
49 LOC107439034 Ptep1.0/2.0 NW_024971668.1 13841 42087 - methionyl-tRNA formyltransferase, mitochondrial aug3.g13525 LOC107439034 0
50 LOC107442050 Ptep1.0/2.0 NW_024970088.1 426101 534623 - laminin subunit alpha-1 aug3.g16317 LOC107442050 0
51 LOC107446220 Ptep1.0/2.0 NW_024971225.1 16884 19096 - transcription factor Sox-14-like aug3.g24914,aug3.g24896 LOC107446335,LOC107446220 0
52 LOC107452612 Ptep1.0/2.0 NW_024969646.1 2491603 2626474 - lysine-specific demethylase 6A aug3.g260 LOC107452612 0
53 LOC107447678 Ptep1.0/2.0 NW_024969609.1 2445589 2461432 + homeobox protein MSH-D aug3.g15189 LOC107447678 0
54 LOC107447988 Ptep1.0/2.0 NW_024969607.1 1626712 1632663 - homeobox protein engrailed-like ceh-16 aug3.g15243 LOC107447988 0
55 LOC107444504 Ptep1.0/2.0 NW_024970398.1 393001 427831 - uncharacterized LOC107444504 aug3.g10054 LOC107444504 0
56 LOC107438760 Ptep1.0/2.0 NW_024970266.1 3014 35987 + RING finger protein 150 aug3.g13351 LOC107438760 0
57 LOC107438772 Ptep1.0/2.0 NW_024969711.1 282269 830582 + POU domain, class 2, transcription factor 3 aug3.g13364 LOC107438772 0
58 LOC107451030 Ptep1.0/2.0 NW_024969755.1 393287 429793 - proton channel OtopLc aug3.g211 LOC107451030 0
59 LOC107443647 Ptep1.0/2.0 NW_024969633.1 2459596 2538273 + plexin-B aug3.g17369 LOC107443647 0
60 LOC107441380 Ptep1.0/2.0 NW_024969770.1 1499361 1504637 + frizzled-4 aug3.g9827 LOC107441380 0
61 LOC107454259 Ptep1.0/2.0 NW_024969605.1 411780 811495 - protocadherin-like wing polarity protein stan aug3.g15160,aug3.g6142,aug3.g22281 LOC107454259 0
62 LOC107449847 Ptep1.0/2.0 NW_024971238.1 50621 62806 - transcription factor HES-7.1 aug3.g20968 LOC107449847 0
63 LOC107440707 Ptep1.0/2.0 NW_024969921.1 967259 1043762 - homeobox protein Mix.2-like aug3.g27124 LOC107440707 0
64 LOC107439143 Ptep1.0/2.0 NW_024969888.1 562906 586993 - protein obstructor-E aug3.g13591 LOC107439143 0
65 LOC107453510 Ptep1.0/2.0 NW_024970128.1 82795 113461 + uncharacterized LOC107453510 aug3.g23818,aug3.g23819 LOC107453510 0
66 LOC107442925 Ptep1.0/2.0 NW_024970173.1 410777 473979 + bone morphogenetic protein 4-like aug3.g16926 LOC107442925 0
67 LOC107443911 Ptep1.0/2.0 NW_024970165.1 417009 611387 + plexin-B aug3.g573 LOC107443911 0
68 LOC107437450 Ptep1.0/2.0 NW_024970351.1 290 56568 - cell adhesion molecule-related/down-regulated by oncogenes aug3.g12323 LOC107437450 0
69 LOC107454179 Ptep1.0/2.0 NW_024969641.1 323500 353007 - delta(14)-sterol reductase TM7SF2 aug3.g23973 LOC107454179 0
70 LOC110283431 Ptep1.0/2.0 NW_024969869.1 895642 904912 - uncharacterized LOC110283431 aug3.g18539 LOC110283431 0
71 LOC107445751 Ptep1.0/2.0 NW_024970056.1 594018 724305 - unconventional myosin-XV aug3.g18724,aug3.g12030,aug3.g20161,aug3.g20780 LOC107445751 0
72 LOC122272478 Ptep1.0/2.0 NW_024972072.1 7613 14561 - uncharacterized LOC122272478 NA 0
73 LOC107443783 Ptep1.0/2.0 NW_024969706.1 2038945 2314643 - plexin-A2 aug3.g428 LOC107443783 0
74 LOC107448451 Ptep1.0/2.0 NW_024969636.1 1217352 1376437 + band 4.1-like protein 4 aug3.g2228 LOC107448451 0
75 LOC107446048 Ptep1.0/2.0 NW_024970843.1 2755 152521 + epidermal growth factor receptor aug3.g18901 LOC107446048 0
76 LOC107454270 Ptep1.0/2.0 NW_024970100.1 423795 541267 + putative polypeptide N-acetylgalactosaminyltransferase 9 aug3.g23989,aug3.g21426 LOC107454270 0
77 LOC107436108 Ptep1.0/2.0 NW_024969622.1 155305 180417 + ankyrin repeat domain-containing protein 10 aug3.g11322 LOC107436108 0
78 LOC107440818 Ptep1.0/2.0 NW_024969740.1 1397511 1405818 - uncharacterized LOC107440818 aug3.g27162 LOC107440818 0
79 LOC107445694 Ptep1.0/2.0 NW_024969911.1 448052 571614 + unconventional myosin-Vb aug3.g9254,aug3.g6148,aug3.g21618 LOC107445694 0
80 LOC107437822 Ptep1.0/2.0 NW_024970078.1 2219 37442 + sentrin-specific protease 6 aug3.g26588 LOC107437822 0
81 LOC107457517 Ptep1.0/2.0 NW_024971257.1 13855 51591 + G1/S-specific cyclin-D2 aug3.g11246,aug3.g11247 LOC107457517 0
82 LOC107443047 Ptep1.0/2.0 NW_024969961.1 124689 238865 + serine/threonine-protein kinase 17A aug3.g27830 LOC107443047 0
83 LOC107441084 Ptep1.0/2.0 NW_024969675.1 143417 263212 + low-density lipoprotein receptor-related protein 2 aug3.g9796 LOC107441084 0
84 LOC107441203 Ptep1.0/2.0 NW_024969863.1 106711 125793 + potassium voltage-gated channel subfamily B member 2 aug3.g27237 LOC107441203 0
85 LOC107438376 Ptep1.0/2.0 NW_024969657.1 544238 613002 - cadherin-87A aug3.g13039 LOC107438376 0
86 LOC110281924 Ptep1.0/2.0 NW_024969777.1 469843 612682 + triadin aug3.g6466,aug3.g6465 LOC110281924 0
87 LOC107438830 Ptep1.0/2.0 NW_024969620.1 1697828 1822919 - uncharacterized LOC107438830 aug3.g26553 LOC107438830 0
88 LOC107445480 Ptep1.0/2.0 NW_024971448.1 50772 63719 + uncharacterized LOC107445480 aug3.g31 LOC107445480 7e-101
89 LOC107449226 Ptep1.0/2.0 NW_024969810.1 603309 915854 - homeobox protein extradenticle aug3.g20631,aug3.g20467 LOC107449226 0
90 LOC107441179 Ptep1.0/2.0 NW_024969792.1 550824 620514 + protein grainyhead aug3.g27212,aug3.g23194,aug3.g10582 LOC107441179,LOC107451351 0
91 LOC107452211 Ptep1.0/2.0 NW_024969686.1 1531235 1597783 + mediator of RNA polymerase II transcription subunit 13 aug3.g4594 LOC107452211 0
92 LOC107447655 Ptep1.0/2.0 NW_024970442.1 52607 68700 - uncharacterized LOC107447655 aug3.g1853 LOC107447655 0
93 LOC107441637 Ptep1.0/2.0 NW_024970565.1 31225 80223 + DNA replication licensing factor mcm4-A aug3.g27383 LOC107441637 0
94 LOC107454332 Ptep1.0/2.0 NW_024969746.1 165432 191434 + rac GTPase-activating protein 1 aug3.g6192 LOC107454332 0
95 LOC107447836 Ptep1.0/2.0 NW_024969791.1 17849 50868 + serine/threonine-protein kinase greatwall aug3.g1943 LOC107447836 0
96 LOC107442148 Ptep1.0/2.0 NW_024970004.1 123208 128927 + frizzled-4 aug3.g27554 LOC107442148 0
97 LOC107453143 Ptep1.0/2.0 NW_024969836.1 1293520 1359043 + steroid hormone receptor ERR2 aug3.g5251 LOC107453143 0
98 LOC107451237 Ptep1.0/2.0 NW_024969845.1 744411 800126 - mutS protein homolog 5 aug3.g15685 LOC107451237 0
99 LOC107447950 Ptep1.0/2.0 NW_024969607.1 481897 500635 - protein lifeguard 2 aug3.g15222,aug3.g6216 LOC107447950 0
100 LOC107438301 Ptep1.0/2.0 NW_024970082.1 78025 165064 + zinc finger protein 236 aug3.g12961 LOC107438301 0
101 LOC107438836 Ptep1.0/2.0 NW_024969620.1 1317647 1343704 - SPARC aug3.g26560 LOC107438836 0
102 LOC107439058 Ptep1.0/2.0 NW_024971146.1 12939 94546 + regulator of G-protein signaling 12 aug3.g26650,aug3.g24025 LOC107439058 0
103 LOC107451464 Ptep1.0/2.0 NW_024970103.1 528261 530087 + transcription factor HES-4-A-like aug3.g4026 LOC107451464 0
104 LOC107453374 Ptep1.0/2.0 NW_024969770.1 890718 955805 - polycomb protein Scm aug3.g23784 LOC107453374 0
105 LOC107449704 Ptep1.0/2.0 NW_024969700.1 1093746 1398733 + semaphorin-2A aug3.g2914 LOC107449704 0
106 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12