Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st7 | GeneID(LOC) list: cluster_14


word count=38
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107439349 Ptep1.0/2.0 NW_024969900.1 153808 160715 + cold and drought-regulated protein CORA aug3.g23220 LOC107439349 1e-159
2 LOC107447678 Ptep1.0/2.0 NW_024969609.1 2445589 2461432 + homeobox protein MSH-D aug3.g15189 LOC107447678 0
3 LOC107444558 Ptep1.0/2.0 NW_024969661.1 1338004 1430226 - paired box protein Pax-5 aug3.g762 LOC107444558 0
4 LOC107448645 Ptep1.0/2.0 NW_024969804.1 48527 119773 - transcription factor Sp9 aug3.g2333 LOC107448645 0
5 LOC107447606 Ptep1.0/2.0 NW_024971237.1 9352 67313 + palmitoleoyl-protein carboxylesterase notum1 aug3.g9270 LOC107447606 0
6 LOC107442927 Ptep1.0/2.0 NW_024971052.1 33401 43140 + uncharacterized LOC107442927 LOC107442927 0
7 LOC107456104 Ptep1.0/2.0 NW_024970773.1 124949 140750 + uncharacterized LOC107456104 aug3.g10934,aug3.g18321 LOC107456104 0
8 LOC107450661 Ptep1.0/2.0 NW_024970076.1 528474 601609 - homeobox protein Hox-A5 aug3.g15606 LOC107450661 0
9 LOC107440619 Ptep1.0/2.0 NW_024970318.1 289854 377527 - ETS domain-containing protein Elk-1 aug3.g9766 LOC107440619 0
10 LOC107448240 Ptep1.0/2.0 NW_024969610.1 719407 731237 + DNA repair protein complementing XP-C cells aug3.g2146,aug3.g23436 LOC107448240 0
11 LOC107456088 Ptep1.0/2.0 NW_024971649.1 3049 50280 + iroquois-class homeodomain protein IRX-6 aug3.g8295 LOC107456088 0
12 LOC107446115 Ptep1.0/2.0 NW_024970281.1 10697 82354 - extracellular sulfatase Sulf-1 aug3.g18939 LOC107446115 0
13 LOC107448924 Ptep1.0/2.0 NW_024971691.1 15090 17941 - uncharacterized LOC107448924 LOC107448924 0
14 LOC122270695 Ptep1.0/2.0 NW_024970320.1 873645 878014 + uncharacterized LOC122270695 aug3.g5030 NA 0
15 LOC107436800 Ptep1.0/2.0 NW_024970309.1 59508 232446 + uncharacterized LOC107436800 aug3.g11835 LOC107436800 0
16 LOC107446220 Ptep1.0/2.0 NW_024971225.1 16884 19096 - transcription factor Sox-14-like aug3.g24914,aug3.g24896 LOC107446335,LOC107446220 0
17 LOC107444253 Ptep1.0/2.0 NW_024970103.1 404502 414936 - transcription factor HES-1-A aug3.g17723 LOC107444253 0
18 LOC107444748 Ptep1.0/2.0 NW_024970651.1 124752 158939 - uncharacterized LOC107444748 aug3.g18068 LOC107444748 0
19 LOC107443537 Ptep1.0/2.0 NW_024969659.1 478057 505195 - uncharacterized LOC107443537 aug3.g471 LOC107443537 0
20 LOC107439655 Ptep1.0/2.0 NW_024969751.1 1353856 1375367 - metacaspase-2 aug3.g13932 LOC107439655 0
21 LOC107438928 Ptep1.0/2.0 NW_024970078.1 97867 104578 + neurofilament heavy polypeptide aug3.g26590 LOC107438928 0
22 LOC107451335 Ptep1.0/2.0 NW_024970681.1 30507 68091 - fatty acid-binding protein aug3.g3973 LOC107451335 0
23 LOC107441179 Ptep1.0/2.0 NW_024969792.1 550824 620514 + protein grainyhead aug3.g27212,aug3.g23194,aug3.g10582 LOC107441179,LOC107451351 0
24 LOC107451147 Ptep1.0/2.0 NW_024970368.1 357542 383584 - uncharacterized LOC107451147 aug3.g3821 LOC107451147 0
25 LOC107455566 Ptep1.0/2.0 NW_024969728.1 733403 751360 - synaptogyrin-1 aug3.g7863 LOC107455566 0
26 LOC107438015 Ptep1.0/2.0 NW_024970324.1 150825 183689 - growth arrest-specific protein 1 aug3.g9575 LOC107438015 0
27 LOC107445800 Ptep1.0/2.0 NW_024970101.1 79911 95971 + protein LSM12 homolog aug3.g18764 LOC107445800 0
28 LOC107451464 Ptep1.0/2.0 NW_024970103.1 528261 530087 + transcription factor HES-4-A-like aug3.g4026 LOC107451464 0
29 LOC107436465 Ptep1.0/2.0 NW_024969927.1 663375 752696 - B-cell lymphoma/leukemia 11A aug3.g26043 LOC107436465 0
30 LOC107448674 Ptep1.0/2.0 NW_024969751.1 922301 975454 + uncharacterized LOC107448674 aug3.g20402 LOC107448674 0
31 LOC107442086 Ptep1.0/2.0 NW_024969781.1 4404709 4418842 + GTP-binding protein 10 aug3.g16351 LOC107442086 0
32 LOC107439117 Ptep1.0/2.0 NW_024971135.1 31688 55586 - myb-related protein B aug3.g26678 LOC107439117 0
33 LOC107443364 Ptep1.0/2.0 NW_024970254.1 5297 27059 + uncharacterized LOC107443364 aug3.g17172 LOC107443364 0
34 LOC107446884 Ptep1.0/2.0 NW_024969797.1 839474 847003 + origin recognition complex subunit 4 aug3.g1503 LOC107446884 0
35 LOC107450335 Ptep1.0/2.0 NW_024969819.1 2114835 2277923 + zinc finger protein basonuclin-2 aug3.g3273 LOC107450335 0
36 LOC107444504 Ptep1.0/2.0 NW_024970398.1 393001 427831 - uncharacterized LOC107444504 aug3.g10054 LOC107444504 0
37 LOC107447988 Ptep1.0/2.0 NW_024969607.1 1626712 1632663 - homeobox protein engrailed-like ceh-16 aug3.g15243 LOC107447988 0
38 LOC107443647 Ptep1.0/2.0 NW_024969633.1 2459596 2538273 + plexin-B aug3.g17369 LOC107443647 0
38 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12