Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st7 | GeneID(LOC) list: cluster_2


word count=98
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107456035 Ptep1.0/2.0 NW_024970085.1 525831 557278 + homeobox protein B-H1 aug3.g8250 LOC107456035 0
2 LOC107442769 Ptep1.0/2.0 NW_024969672.1 162686 290950 - neurogenic locus Notch protein aug3.g27737,aug3.g21218 LOC107442769 0
3 LOC107436847 Ptep1.0/2.0 NW_024969813.1 635864 695250 + T-box transcription factor TBX20-like aug3.g11865 LOC107436847 0
4 LOC107437002 Ptep1.0/2.0 NW_024971413.1 64921 188667 + adhesion G protein-coupled receptor L1 aug3.g9493 LOC107437002 0
5 LOC107451579 Ptep1.0/2.0 NW_024970106.1 1155904 1253584 + E3 ubiquitin-protein ligase Rnf220 aug3.g4121 LOC107451579 0
6 LOC107440711 Ptep1.0/2.0 NW_024969921.1 457405 558369 - homeobox protein Hox-A1 aug3.g27130 LOC107440711 0
7 LOC107441380 Ptep1.0/2.0 NW_024969770.1 1499361 1504637 + frizzled-4 aug3.g9827 LOC107441380 0
8 LOC107455688 Ptep1.0/2.0 NW_024969831.1 408849 511729 - uncharacterized LOC107455688 LOC107455688 0
9 LOC107455686 Ptep1.0/2.0 NW_024969831.1 512171 545973 + homeobox protein Hox-A1-like aug3.g7954 LOC107455686 0
10 LOC107451394 Ptep1.0/2.0 NW_024970213.1 343828 437631 - frizzled-5 aug3.g4009 LOC107451394 0
11 LOC107450063 Ptep1.0/2.0 NW_024969698.1 603238 707119 + homeobox protein Meis1 aug3.g3111 LOC107450063 0
12 LOC107447205 Ptep1.0/2.0 NW_024969777.1 156659 277064 - roundabout homolog 1 aug3.g1658 LOC107447205 0
13 LOC107445973 Ptep1.0/2.0 NW_024969716.1 877125 894039 + uncharacterized LOC107445973 aug3.g18851 LOC107445973 0
14 LOC107454167 Ptep1.0/2.0 NW_024995499.1 704 1065 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
14 LOC107454167_1 Ptep1.0/2.0 NW_024969641.1 594712 690101 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
15 LOC107436358 Ptep1.0/2.0 NW_024969815.1 644726 725669 + fasciclin-2 aug3.g11491 LOC107436358 0
16 LOC107443696 Ptep1.0/2.0 NW_024970028.1 222440 238717 + protein snail homolog Sna aug3.g416,aug3.g417 LOC107443696 0
17 LOC107454760 Ptep1.0/2.0 NW_024969730.1 633181 756431 - ankyrin repeat domain-containing protein 6 aug3.g24117 LOC107454760 0
18 LOC107443349 Ptep1.0/2.0 NW_024969700.1 941315 945753 - forkhead box protein B1-like aug3.g9968 LOC107443349 0
19 LOC122273574 Ptep1.0/2.0 NW_024977316.1 128 1427 + serine protease 27-like aug3.g12644 NA 0
20 LOC107450100 Ptep1.0/2.0 NW_024969801.1 3126345 3185727 + homeobox protein DLX-6-like aug3.g15531 LOC107450100 0
21 LOC107442927 Ptep1.0/2.0 NW_024971052.1 33401 43140 + uncharacterized LOC107442927 LOC107442927 0
22 LOC107440240 Ptep1.0/2.0 NW_024970743.1 104190 175589 - protein patched-like aug3.g14374 LOC107440240 0
23 LOC107449282 Ptep1.0/2.0 NW_024969650.1 506400 508707 + uncharacterized LOC107449282 aug3.g20669 LOC107449282 0
24 LOC107450690 Ptep1.0/2.0 NW_024970489.1 54137 109046 + uncharacterized LOC107450690 aug3.g25707 LOC107450690 0
25 LOC107445214 Ptep1.0/2.0 NW_024971245.1 51238 99418 - sodium-dependent neutral amino acid transporter B(0)AT3 aug3.g18382,aug3.g18383 LOC107445214 0
26 LOC107437911 Ptep1.0/2.0 NW_024969660.1 1275804 1297309 + serine protease 27 aug3.g12644 LOC107437911 0
27 LOC107440157 Ptep1.0/2.0 NW_024970490.1 4863 141355 + zinc finger protein 423 aug3.g14296 LOC107440157 0
28 LOC107436691 Ptep1.0/2.0 NW_024969616.1 2378897 2439753 + uncharacterized LOC107436691 aug3.g11765 LOC107436691 0
29 LOC107448645 Ptep1.0/2.0 NW_024969804.1 48527 119773 - transcription factor Sp9 aug3.g2333 LOC107448645 0
30 LOC107457539 Ptep1.0/2.0 NW_024969659.1 595765 831003 + zinc finger homeobox protein 3 aug3.g11268 LOC107457539 0
31 LOC107445280 Ptep1.0/2.0 NW_024970120.1 810947 823552 - uncharacterized LOC107445280 aug3.g9244 LOC107445280 0
32 LOC107439046 Ptep1.0/2.0 NW_024969672.1 778242 1093632 + homeobox protein extradenticle aug3.g13538,aug3.g27748,aug3.g27747 LOC107439046 0
33 LOC107453499 Ptep1.0/2.0 NW_024969603.1 1608727 1711074 - zinc finger homeobox protein 4 aug3.g25763 LOC107453499 0
34 LOC107440894 Ptep1.0/2.0 NW_024969752.1 1800 34134 + latrophilin Cirl aug3.g56 LOC107440894 0
35 LOC107438732 Ptep1.0/2.0 NW_024969622.1 1361500 1374934 + somatomedin-B and thrombospondin type-1 domain-containing protein aug3.g26535 LOC107438732 0
36 LOC107442777 Ptep1.0/2.0 NW_024969672.1 310834 373618 + U3 small nucleolar ribonucleoprotein protein IMP3 aug3.g27738 LOC107442777 0
37 LOC107443668 Ptep1.0/2.0 NW_024970586.1 283151 376682 - metalloprotease TIKI2 aug3.g17382,aug3.g18676 LOC107443668 0
38 LOC107454846 Ptep1.0/2.0 NW_024970597.1 135149 243858 - RNA-binding protein fusilli aug3.g10830 LOC107454846 0
39 LOC122271530 Ptep1.0/2.0 NW_024970905.1 179084 206389 + protein yippee-like 1 aug3.g11843,aug3.g11842 NA 0
40 LOC107441084 Ptep1.0/2.0 NW_024969675.1 143417 263212 + low-density lipoprotein receptor-related protein 2 aug3.g9796 LOC107441084 0
41 LOC107455742 Ptep1.0/2.0 NW_024969954.1 252968 304281 + protein hunchback-like aug3.g25126 LOC107455742 0
42 LOC107455121 Ptep1.0/2.0 NW_024969752.1 5130489 5263483 + tyrosine-protein phosphatase 99A aug3.g6819,aug3.g6820 LOC107455121 0
43 LOC107441868 Ptep1.0/2.0 NW_024970214.1 219176 476989 + uncharacterized LOC107441868 aug3.g27457,aug3.g10400 LOC107441868 0
44 LOC107438948 Ptep1.0/2.0 NW_024969835.1 314230 529731 + rhomboid-related protein 2 aug3.g13482 LOC107438948 0
45 LOC107441203 Ptep1.0/2.0 NW_024969863.1 106711 125793 + potassium voltage-gated channel subfamily B member 2 aug3.g27237 LOC107441203 0
46 LOC107441688 Ptep1.0/2.0 NW_024969976.1 310836 354704 - recombining binding protein suppressor of hairless aug3.g27389 LOC107441688 0
47 LOC107457541 Ptep1.0/2.0 NW_024969659.1 579192 622804 - uncharacterized LOC107457541 LOC107457541 0
48 LOC107437748 Ptep1.0/2.0 NW_024969659.1 2396380 2411412 - adipolin aug3.g12543 LOC107437748 0
49 LOC107438760 Ptep1.0/2.0 NW_024970266.1 3014 35987 + RING finger protein 150 aug3.g13351 LOC107438760 0
50 LOC107436350 Ptep1.0/2.0 NW_024970327.1 158464 317416 + glypican-6 aug3.g11833,aug3.g11486 LOC107436350 0
51 LOC107449746 Ptep1.0/2.0 NW_024970266.1 230577 312246 - nuclear receptor subfamily 2 group F member 1-A aug3.g2915 LOC107449746 0
52 LOC107451335 Ptep1.0/2.0 NW_024970681.1 30507 68091 - fatty acid-binding protein aug3.g3973 LOC107451335 0
53 LOC107450096 Ptep1.0/2.0 NW_024969801.1 2449227 2502775 + sodium- and chloride-dependent glycine transporter 1 aug3.g15542 LOC107450096 0
54 LOC107445694 Ptep1.0/2.0 NW_024969911.1 448052 571614 + unconventional myosin-Vb aug3.g9254,aug3.g6148,aug3.g21618 LOC107445694 0
55 LOC107439742 Ptep1.0/2.0 NW_024969918.1 756382 857639 + phosphatidylinositol 3-kinase regulatory subunit alpha aug3.g26883 LOC107439742 0
56 LOC107452953 Ptep1.0/2.0 NW_024970379.1 75458 138289 + macoilin-1 aug3.g5111,aug3.g21074 LOC107450123,LOC107452953 0
57 LOC107441179 Ptep1.0/2.0 NW_024969792.1 550824 620514 + protein grainyhead aug3.g27212,aug3.g23194,aug3.g10582 LOC107441179,LOC107451351 0
58 LOC107439278 Ptep1.0/2.0 NW_024969646.1 3785604 3897855 - uncharacterized LOC107439278 aug3.g13670 LOC107439278 0
59 LOC107456361 Ptep1.0/2.0 NW_024970195.1 319203 413295 - uncharacterized LOC107456361 aug3.g10951 LOC107456361 0
60 LOC107446082 Ptep1.0/2.0 NW_024969638.1 239479 381182 + sodium- and chloride-dependent glycine transporter 1 aug3.g1218 LOC107446082 0
61 LOC107451211 Ptep1.0/2.0 NW_024969611.1 2052284 2349554 - ephrin type-B receptor 2 aug3.g3879 LOC107451211 0
62 LOC107452888 Ptep1.0/2.0 NW_024969945.1 216162 280847 - uncharacterized LOC107452888 aug3.g5060 LOC107452888 0
63 LOC110283431 Ptep1.0/2.0 NW_024969869.1 895642 904912 - uncharacterized LOC110283431 aug3.g18539 LOC110283431 0
64 LOC107452617 Ptep1.0/2.0 NW_024969646.1 1511462 1596907 - G protein-coupled receptor kinase 2 aug3.g279 LOC107452617 0
65 LOC107438376 Ptep1.0/2.0 NW_024969657.1 544238 613002 - cadherin-87A aug3.g13039 LOC107438376 0
66 LOC107456864 Ptep1.0/2.0 NW_024969914.1 23567 109354 - exonuclease GOR-like aug3.g18504,aug3.g1256 LOC107456864 0
67 LOC107441635 Ptep1.0/2.0 NW_024970565.1 130535 170173 - transcriptional activator protein Pur-beta aug3.g27379 LOC107441635 0
68 LOC107440089 Ptep1.0/2.0 NW_024969735.1 2094076 2122982 + uncharacterized LOC107440089 aug3.g26974 LOC107440089 0
69 LOC107451030 Ptep1.0/2.0 NW_024969755.1 393287 429793 - proton channel OtopLc aug3.g211 LOC107451030 0
70 LOC107438833 Ptep1.0/2.0 NW_024969620.1 1607966 1636310 - replication protein A 32 kDa subunit-B aug3.g26556 LOC107438833 0
71 LOC107437115 Ptep1.0/2.0 NW_024969780.1 1611276 1705234 - one cut domain family member 2 aug3.g26177 LOC107437115 0
72 LOC107448886 Ptep1.0/2.0 NW_024969663.1 404535 455568 - splicing factor 3A subunit 1 aug3.g15383 LOC107448886 0
73 LOC107440719 Ptep1.0/2.0 NW_024969901.1 1307854 1549906 + disks large 1 tumor suppressor protein aug3.g14770,aug3.g15874,aug3.g21064 LOC107440719,LOC107441392 0
74 LOC107439350 Ptep1.0/2.0 NW_024970014.1 656227 670634 + protein 60A aug3.g13706 LOC107439350 0
75 LOC107451960 Ptep1.0/2.0 NW_024970267.1 149619 162084 + uncharacterized LOC107451960 aug3.g11016,aug3.g4434 LOC107451960 0
76 LOC107456289 Ptep1.0/2.0 NW_024969687.1 1787434 1878048 + transcription initiation factor TFIID subunit 8 aug3.g8457 LOC107456289 0
77 LOC107451237 Ptep1.0/2.0 NW_024969845.1 744411 800126 - mutS protein homolog 5 aug3.g15685 LOC107451237 0
78 LOC107442193 Ptep1.0/2.0 NW_024970573.1 231204 285004 + neogenin aug3.g16412 LOC107442193 0
79 LOC107441411 Ptep1.0/2.0 NW_024969770.1 1575994 1641019 + uncharacterized LOC107441411 aug3.g9829 LOC107441411 0
80 LOC107455850 Ptep1.0/2.0 NW_024970537.1 67033 131929 - transmembrane protein 178B aug3.g8086,aug3.g8085 LOC107455850 0
81 LOC107436164 Ptep1.0/2.0 NW_024969720.1 303697 337281 + serine/arginine repetitive matrix protein 2 aug3.g25967 LOC107436164 0
82 LOC107447725 Ptep1.0/2.0 NW_024969606.1 2126247 2134761 - uncharacterized LOC107447725 aug3.g1888 LOC107447725 0
83 LOC107438242 Ptep1.0/2.0 NW_024970132.1 546577 625801 - growth arrest-specific protein 2 aug3.g12936 LOC107438242 0
84 LOC107439669 Ptep1.0/2.0 NW_024971393.1 1669 39371 - histone H3-like centromeric protein cid aug3.g13949,aug3.g13948 LOC107439669 0
85 LOC107450660 Ptep1.0/2.0 NW_024970489.1 2325 46694 + uncharacterized LOC107450660 aug3.g25705 LOC107450660,LOC110283140 0
86 LOC107443758 Ptep1.0/2.0 NW_024969706.1 1741270 1778310 - transcription factor AP-4 aug3.g424 LOC107443758 0
87 LOC107456300 Ptep1.0/2.0 NW_024970668.1 72398 134748 - structural maintenance of chromosomes protein 3 aug3.g8473 LOC107456300 0
88 LOC107443419 Ptep1.0/2.0 NW_024970450.1 9591 46074 + carnitine O-palmitoyltransferase 1, muscle isoform aug3.g17212 LOC107443419 0
89 LOC107440583 Ptep1.0/2.0 NW_024969814.1 788428 875504 + uncharacterized LOC107440583 aug3.g14659 LOC107440583 0
90 LOC107444578 Ptep1.0/2.0 NW_024969761.1 91499 161185 - amphiphysin aug3.g17965,aug3.g17964 LOC107444578 0
91 LOC107454693 Ptep1.0/2.0 NW_024970788.1 3922 65247 + retinoblastoma-like protein 1 aug3.g6461 LOC107454693 0
92 LOC107440564 Ptep1.0/2.0 NW_024970468.1 221588 282816 + uncharacterized LOC107440564 aug3.g14630 LOC107440564 0
93 LOC107442231 Ptep1.0/2.0 NW_024969650.1 503170 644233 + uncharacterized LOC107442231 aug3.g27564,aug3.g20669,aug3.g20671 LOC107442231 0
94 LOC107451942 Ptep1.0/2.0 NW_024970461.1 153699 226970 + protein NDNF aug3.g4413 LOC107451942 0
95 LOC107451075 Ptep1.0/2.0 NW_024969768.1 21201 54480 - uncharacterized LOC107451075 aug3.g21386 LOC107451075 0
96 LOC107437400 Ptep1.0/2.0 NW_024970116.1 498885 549784 - histone-lysine N-methyltransferase, H3 lysine-79 specific aug3.g26245 LOC107437400 0
97 LOC107446928 Ptep1.0/2.0 NW_024969679.1 544780 607596 - uncharacterized LOC107446928 aug3.g13433,aug3.g1545 LOC107446928 0
98 LOC107450095 Ptep1.0/2.0 NW_024969801.1 1838760 2012911 - uncharacterized LOC107450095 aug3.g15547 LOC107450095 0
99 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12