Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st7 | GeneID(LOC) list: cluster_20


word count=81
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107451631 Ptep1.0/2.0 NW_024970632.1 91730 123570 + protein odd-skipped-related 2 aug3.g21549,aug3.g17123 LOC107451631 0
2 LOC107444121 Ptep1.0/2.0 NW_024969702.1 163730 402976 + uncharacterized LOC107444121 aug3.g17638 LOC107444121 0
3 LOC107442769 Ptep1.0/2.0 NW_024969672.1 162686 290950 - neurogenic locus Notch protein aug3.g27737,aug3.g21218 LOC107442769 0
4 LOC107447507 Ptep1.0/2.0 NW_024969702.1 530177 590436 - homeobox protein Hox-A5 aug3.g17640 LOC107447507 8e-149
5 LOC107439143 Ptep1.0/2.0 NW_024969888.1 562906 586993 - protein obstructor-E aug3.g13591 LOC107439143 0
6 LOC107453260 Ptep1.0/2.0 NW_024970665.1 35396 80164 - homeobox protein GBX-2 aug3.g5351 LOC107453260 0
7 LOC107451211 Ptep1.0/2.0 NW_024969611.1 2052284 2349554 - ephrin type-B receptor 2 aug3.g3879 LOC107451211 0
8 LOC107448645 Ptep1.0/2.0 NW_024969804.1 48527 119773 - transcription factor Sp9 aug3.g2333 LOC107448645 0
9 LOC107451685 Ptep1.0/2.0 NW_024969853.1 177887 310356 - roundabout homolog 3 aug3.g10604 LOC107451685 0
10 LOC107450063 Ptep1.0/2.0 NW_024969698.1 603238 707119 + homeobox protein Meis1 aug3.g3111 LOC107450063 0
11 LOC107441868 Ptep1.0/2.0 NW_024970214.1 219176 476989 + uncharacterized LOC107441868 aug3.g27457,aug3.g10400 LOC107441868 0
12 LOC107451394 Ptep1.0/2.0 NW_024970213.1 343828 437631 - frizzled-5 aug3.g4009 LOC107451394 0
13 LOC107454760 Ptep1.0/2.0 NW_024969730.1 633181 756431 - ankyrin repeat domain-containing protein 6 aug3.g24117 LOC107454760 0
14 LOC107456088 Ptep1.0/2.0 NW_024971649.1 3049 50280 + iroquois-class homeodomain protein IRX-6 aug3.g8295 LOC107456088 0
15 LOC107437755 Ptep1.0/2.0 NW_024971438.1 15552 47510 + cytochrome P450 3A8 aug3.g12552 LOC107437755 0
16 LOC107441380 Ptep1.0/2.0 NW_024969770.1 1499361 1504637 + frizzled-4 aug3.g9827 LOC107441380 0
17 LOC107437305 Ptep1.0/2.0 NW_024970197.1 359527 396131 - zinc finger protein ZIC 4-like aug3.g12202 LOC107437305 0
18 LOC107450357 Ptep1.0/2.0 NW_024969725.1 527726 648489 - uncharacterized LOC107450357 aug3.g3277 LOC107450357 0
19 LOC107453499 Ptep1.0/2.0 NW_024969603.1 1608727 1711074 - zinc finger homeobox protein 4 aug3.g25763 LOC107453499 0
20 LOC107445973 Ptep1.0/2.0 NW_024969716.1 877125 894039 + uncharacterized LOC107445973 aug3.g18851 LOC107445973 0
21 LOC107456864 Ptep1.0/2.0 NW_024969914.1 23567 109354 - exonuclease GOR-like aug3.g18504,aug3.g1256 LOC107456864 0
22 LOC107447988 Ptep1.0/2.0 NW_024969607.1 1626712 1632663 - homeobox protein engrailed-like ceh-16 aug3.g15243 LOC107447988 0
23 LOC107448712 Ptep1.0/2.0 NW_024970434.1 191819 230684 + transcriptional repressor scratch 2-like aug3.g2368 LOC107448712 0
24 LOC107437002 Ptep1.0/2.0 NW_024971413.1 64921 188667 + adhesion G protein-coupled receptor L1 aug3.g9493 LOC107437002 0
25 LOC107443946 Ptep1.0/2.0 NW_024970769.1 73366 90135 + extracellular serine/threonine protein kinase four-jointed-like aug3.g581 LOC107443946 0
26 LOC107454167 Ptep1.0/2.0 NW_024995499.1 704 1065 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
26 LOC107454167_1 Ptep1.0/2.0 NW_024969641.1 594712 690101 + dorsal-ventral patterning protein Sog-like aug3.g23966 LOC107454167 0
27 LOC107436350 Ptep1.0/2.0 NW_024970327.1 158464 317416 + glypican-6 aug3.g11833,aug3.g11486 LOC107436350 0
28 LOC107440894 Ptep1.0/2.0 NW_024969752.1 1800 34134 + latrophilin Cirl aug3.g56 LOC107440894 0
29 LOC110281924 Ptep1.0/2.0 NW_024969777.1 469843 612682 + triadin aug3.g6466,aug3.g6465 LOC110281924 0
30 LOC107442927 Ptep1.0/2.0 NW_024971052.1 33401 43140 + uncharacterized LOC107442927 LOC107442927 0
31 LOC107436358 Ptep1.0/2.0 NW_024969815.1 644726 725669 + fasciclin-2 aug3.g11491 LOC107436358 0
32 LOC107436783 Ptep1.0/2.0 NW_024969630.1 1302929 1514406 - teneurin-m aug3.g11824,aug3.g22153,aug3.g11825 LOC107436783,LOC107454543 0
33 LOC107449282 Ptep1.0/2.0 NW_024969650.1 506400 508707 + uncharacterized LOC107449282 aug3.g20669 LOC107449282 0
34 LOC107438732 Ptep1.0/2.0 NW_024969622.1 1361500 1374934 + somatomedin-B and thrombospondin type-1 domain-containing protein aug3.g26535 LOC107438732 0
35 LOC107453559 Ptep1.0/2.0 NW_024970641.1 261643 275007 - uncharacterized LOC107453559 aug3.g5569 LOC107453559 0
36 LOC107454814 Ptep1.0/2.0 NW_024969818.1 919745 981712 + uncharacterized LOC107454814 aug3.g6557 LOC107454814 0
37 LOC107436847 Ptep1.0/2.0 NW_024969813.1 635864 695250 + T-box transcription factor TBX20-like aug3.g11865 LOC107436847 0
38 LOC107450100 Ptep1.0/2.0 NW_024969801.1 3126345 3185727 + homeobox protein DLX-6-like aug3.g15531 LOC107450100 0
39 LOC107455121 Ptep1.0/2.0 NW_024969752.1 5130489 5263483 + tyrosine-protein phosphatase 99A aug3.g6819,aug3.g6820 LOC107455121 0
40 LOC107448674 Ptep1.0/2.0 NW_024969751.1 922301 975454 + uncharacterized LOC107448674 aug3.g20402 LOC107448674 0
41 LOC107438772 Ptep1.0/2.0 NW_024969711.1 282269 830582 + POU domain, class 2, transcription factor 3 aug3.g13364 LOC107438772 0
42 LOC107437748 Ptep1.0/2.0 NW_024969659.1 2396380 2411412 - adipolin aug3.g12543 LOC107437748 0
43 LOC107455742 Ptep1.0/2.0 NW_024969954.1 252968 304281 + protein hunchback-like aug3.g25126 LOC107455742 0
44 LOC107451942 Ptep1.0/2.0 NW_024970461.1 153699 226970 + protein NDNF aug3.g4413 LOC107451942 0
45 LOC107436894 Ptep1.0/2.0 NW_024969612.1 1030321 1221533 + zinc finger protein rotund aug3.g394 LOC107436894 0
46 LOC107441035 Ptep1.0/2.0 NW_024970453.1 72509 141434 + connectin aug3.g27196,aug3.g27195 LOC107441035 0
47 LOC107441084 Ptep1.0/2.0 NW_024969675.1 143417 263212 + low-density lipoprotein receptor-related protein 2 aug3.g9796 LOC107441084 0
48 LOC107450690 Ptep1.0/2.0 NW_024970489.1 54137 109046 + uncharacterized LOC107450690 aug3.g25707 LOC107450690 0
49 LOC107456361 Ptep1.0/2.0 NW_024970195.1 319203 413295 - uncharacterized LOC107456361 aug3.g10951 LOC107456361 0
50 LOC107453510 Ptep1.0/2.0 NW_024970128.1 82795 113461 + uncharacterized LOC107453510 aug3.g23818,aug3.g23819 LOC107453510 0
51 LOC107457068 Ptep1.0/2.0 NW_024970155.1 264920 484141 + MOB kinase activator-like 2 aug3.g9057 LOC107457068 0
52 LOC107451660 Ptep1.0/2.0 NW_024970846.1 24518 42153 - vitamin K-dependent protein C aug3.g4198 LOC107451660 0
53 LOC107454846 Ptep1.0/2.0 NW_024970597.1 135149 243858 - RNA-binding protein fusilli aug3.g10830 LOC107454846 0
54 LOC107447205 Ptep1.0/2.0 NW_024969777.1 156659 277064 - roundabout homolog 1 aug3.g1658 LOC107447205 0
55 LOC107449847 Ptep1.0/2.0 NW_024971238.1 50621 62806 - transcription factor HES-7.1 aug3.g20968 LOC107449847 0
56 LOC107438760 Ptep1.0/2.0 NW_024970266.1 3014 35987 + RING finger protein 150 aug3.g13351 LOC107438760 0
57 LOC107444068 Ptep1.0/2.0 NW_024969885.1 708750 778915 + serine-rich adhesin for platelets aug3.g10014,aug3.g22916 LOC107444068 0
58 LOC107453671 Ptep1.0/2.0 NW_024969708.1 1347456 1385463 - silent chromatin protein ESC1 aug3.g5674 LOC107453671 0
59 LOC107442148 Ptep1.0/2.0 NW_024970004.1 123208 128927 + frizzled-4 aug3.g27554 LOC107442148 0
60 LOC107455850 Ptep1.0/2.0 NW_024970537.1 67033 131929 - transmembrane protein 178B aug3.g8086,aug3.g8085 LOC107455850 0
61 LOC107439920 Ptep1.0/2.0 NW_024969630.1 258796 385787 - LIM and calponin homology domains-containing protein 1 aug3.g14125 LOC107439920 0
62 LOC107443911 Ptep1.0/2.0 NW_024970165.1 417009 611387 + plexin-B aug3.g573 LOC107443911 0
63 LOC107444748 Ptep1.0/2.0 NW_024970651.1 124752 158939 - uncharacterized LOC107444748 aug3.g18068 LOC107444748 0
64 LOC107446115 Ptep1.0/2.0 NW_024970281.1 10697 82354 - extracellular sulfatase Sulf-1 aug3.g18939 LOC107446115 0
65 LOC107439046 Ptep1.0/2.0 NW_024969672.1 778242 1093632 + homeobox protein extradenticle aug3.g13538,aug3.g27748,aug3.g27747 LOC107439046 0
66 LOC107451335 Ptep1.0/2.0 NW_024970681.1 30507 68091 - fatty acid-binding protein aug3.g3973 LOC107451335 0
67 LOC107440431 Ptep1.0/2.0 NW_024970875.1 125639 146493 + SEC14-like protein 2 aug3.g27058 LOC107440431 0
68 LOC107450033 Ptep1.0/2.0 NW_024969620.1 73575 233208 + protein pangolin, isoforms A/H/I/S aug3.g10490,aug3.g18357 LOC107450033 0
69 LOC107448109 Ptep1.0/2.0 NW_024970938.1 137341 176460 - splicing factor, suppressor of white-apricot homolog aug3.g20129 LOC107448109 0
70 LOC107440619 Ptep1.0/2.0 NW_024970318.1 289854 377527 - ETS domain-containing protein Elk-1 aug3.g9766 LOC107440619 0
71 LOC107437450 Ptep1.0/2.0 NW_024970351.1 290 56568 - cell adhesion molecule-related/down-regulated by oncogenes aug3.g12323 LOC107437450 0
72 LOC107442231 Ptep1.0/2.0 NW_024969650.1 503170 644233 + uncharacterized LOC107442231 aug3.g27564,aug3.g20669,aug3.g20671 LOC107442231 0
73 LOC107451030 Ptep1.0/2.0 NW_024969755.1 393287 429793 - proton channel OtopLc aug3.g211 LOC107451030 0
74 LOC107441203 Ptep1.0/2.0 NW_024969863.1 106711 125793 + potassium voltage-gated channel subfamily B member 2 aug3.g27237 LOC107441203 0
75 LOC107441635 Ptep1.0/2.0 NW_024970565.1 130535 170173 - transcriptional activator protein Pur-beta aug3.g27379 LOC107441635 0
76 LOC122273574 Ptep1.0/2.0 NW_024977316.1 128 1427 + serine protease 27-like aug3.g12644 NA 0
77 LOC107450660 Ptep1.0/2.0 NW_024970489.1 2325 46694 + uncharacterized LOC107450660 aug3.g25705 LOC107450660,LOC110283140 0
78 LOC107449579 Ptep1.0/2.0 NW_024970177.1 205034 336536 + muscle calcium channel subunit alpha-1 aug3.g2843,aug3.g21678 LOC107449579,LOC107452166 0
79 LOC107440910 Ptep1.0/2.0 NW_024970086.1 428972 512035 + serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform aug3.g25508,aug3.g25509 LOC107440910 0
80 LOC107450119 Ptep1.0/2.0 NW_024969786.1 1486843 1546248 + nuclear pore membrane glycoprotein 210 aug3.g3136 LOC107450119 0
81 LOC107449585 Ptep1.0/2.0 NW_024970177.1 25256 102724 - phosphatidylinositol-binding clathrin assembly protein LAP aug3.g2839 LOC107449585 0
82 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12