Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st7 | GeneID(LOC) list: cluster_23


word count=69
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC107457082 Ptep1.0/2.0 NW_024969854.1 309682 339318 - retinal homeobox protein Rax aug3.g9068 LOC107457082 0
2 LOC107457078 Ptep1.0/2.0 NW_024969854.1 211110 241923 + retinal homeobox protein Rx1 aug3.g9070 LOC107457078 0
3 LOC107436595 Ptep1.0/2.0 NW_024969823.1 1344184 1450650 + paired box protein Pax-6 aug3.g11688 LOC107436595 0
4 LOC107453177 Ptep1.0/2.0 NW_024969876.1 307273 383868 + T-box transcription factor TBX3 aug3.g5279 LOC107453177 0
5 LOC107456902 Ptep1.0/2.0 NW_024969708.1 1841289 2005694 + homeobox protein dve-1 aug3.g8928,aug3.g5686 LOC107456902 0
6 LOC107444265 Ptep1.0/2.0 NW_024971348.1 1552 13304 + noggin-2 aug3.g17729 LOC107444265 0
7 LOC107451108 Ptep1.0/2.0 NW_024970282.1 147413 248907 + optomotor-blind protein aug3.g3790 LOC107451108 0
8 LOC107444665 Ptep1.0/2.0 NW_024970315.1 268279 295533 + nuclear receptor subfamily 2 group E member 1 aug3.g794 LOC107444665 0
9 LOC107447180 Ptep1.0/2.0 NW_024969738.1 599279 704963 + protein Wnt-5b-like aug3.g1632 LOC107447180 0
10 LOC107444744 Ptep1.0/2.0 NW_024969596.1 1108746 1179192 - transcription factor SOX-8 aug3.g816 LOC107444744 0
11 LOC107438084 Ptep1.0/2.0 NW_024970334.1 37561 142151 - pro-neuregulin-2, membrane-bound isoform aug3.g12807 LOC107438084 0
12 LOC107450100 Ptep1.0/2.0 NW_024969801.1 3126345 3185727 + homeobox protein DLX-6-like aug3.g15531 LOC107450100 0
13 LOC107448880 Ptep1.0/2.0 NW_024969637.1 1679705 1993013 + endothelial transcription factor GATA-2-like aug3.g20514 LOC107448880 0
14 LOC107441893 Ptep1.0/2.0 NW_024969823.1 1717036 1803416 - paired box protein Pax-6 aug3.g19451,aug3.g24194,aug3.g22155,aug3.g19881 LOC107446875,LOC107447639,LOC107441893 0
15 LOC107450980 Ptep1.0/2.0 NW_024969876.1 614654 719951 + T-box transcription factor TBX3-like aug3.g3745,aug3.g5279 LOC107450980 0
16 LOC107457243 Ptep1.0/2.0 NW_024969909.1 110141 237797 - protein Wnt-16-like aug3.g11009 LOC107457243 0
17 LOC107451531 Ptep1.0/2.0 NW_024970841.1 49274 60976 + histidine-rich glycoprotein aug3.g4083 LOC107451531 0
18 LOC107453701 Ptep1.0/2.0 NW_024969823.1 55411 148082 + matrix metalloproteinase-21 aug3.g5702 LOC107453701 0
19 LOC107453612 Ptep1.0/2.0 NW_024969989.1 108237 160230 + protein Wnt-8b-like aug3.g5617 LOC107453612 0
20 LOC107450977 Ptep1.0/2.0 NW_024969876.1 790959 800336 + T-box transcription factor TBX3 aug3.g3746 LOC107450977 0
21 LOC107446074 Ptep1.0/2.0 NW_024969638.1 486050 647375 - glypican-5 aug3.g1222 LOC107446074 0
22 LOC107449611 Ptep1.0/2.0 NW_024969901.1 310205 442919 - protein dachsous aug3.g2859 LOC107449611 0
23 LOC107436783 Ptep1.0/2.0 NW_024969630.1 1302929 1514406 - teneurin-m aug3.g11824,aug3.g22153,aug3.g11825 LOC107436783,LOC107454543 0
24 LOC107446082 Ptep1.0/2.0 NW_024969638.1 239479 381182 + sodium- and chloride-dependent glycine transporter 1 aug3.g1218 LOC107446082 0
25 LOC107445741 Ptep1.0/2.0 NW_024970109.1 251823 312786 - MAM and LDL-receptor class A domain-containing protein 1 aug3.g18713,aug3.g22107 LOC107445741,LOC107454311 0
26 LOC107457564 Ptep1.0/2.0 NW_024970001.1 631432 721682 - homeobox protein OTX2 aug3.g25936 LOC107457564 0
27 LOC107447307 Ptep1.0/2.0 NW_024971214.1 14262 18868 + uncharacterized LOC107447307 aug3.g21167 LOC107447307 0
28 LOC107437748 Ptep1.0/2.0 NW_024969659.1 2396380 2411412 - adipolin aug3.g12543 LOC107437748 0
29 LOC107457180 Ptep1.0/2.0 NW_024969714.1 1023351 1149707 - protein jagged-1 aug3.g9162,aug3.g9161 LOC107457180 0
30 LOC107437564 Ptep1.0/2.0 NW_024970114.1 1438948 1477637 - uncharacterized LOC107437564 aug3.g12420 LOC107437564 0
31 LOC107443591 Ptep1.0/2.0 NW_024970881.1 73128 111638 - BMP and activin membrane-bound inhibitor homolog aug3.g17346 LOC107443591 0
32 LOC107447826 Ptep1.0/2.0 NW_024969791.1 299362 423906 + serine-rich adhesin for platelets aug3.g1934,aug3.g24931 LOC107447826 0
33 LOC107450632 Ptep1.0/2.0 NW_024969599.1 1509795 1608973 - netrin-1 aug3.g3497 LOC107450632 0
34 LOC107448306 Ptep1.0/2.0 NW_024970226.1 295942 448328 + homeobox protein prospero aug3.g15298 LOC107448306 0
35 LOC107438714 Ptep1.0/2.0 NW_024970015.1 652540 747387 + transcriptional activator cubitus interruptus-like aug3.g13321 LOC107438714 0
36 LOC107457317 Ptep1.0/2.0 NW_024971129.1 18367 41583 + uncharacterized protein DDB_G0286299 aug3.g11065 LOC107457317 0
37 LOC107442497 Ptep1.0/2.0 NW_024970178.1 570255 583598 - uncharacterized LOC107442497 aug3.g27670,aug3.g20943 LOC107442497 0
38 LOC107449016 Ptep1.0/2.0 NW_024969596.1 1405565 1452832 + uncharacterized LOC107449016 aug3.g2534,aug3.g2533 LOC107449016 0
39 LOC107457189 Ptep1.0/2.0 NW_024971022.1 57223 104397 + homeobox protein OTX2-A-like aug3.g9172 LOC107457189 0
40 LOC107452205 Ptep1.0/2.0 NW_024970225.1 272031 275599 - fork head domain-containing protein FD5-like aug3.g4586 LOC107452205 0
41 LOC107437772 Ptep1.0/2.0 NW_024970300.1 148355 204300 + MICAL-like protein 2 aug3.g12570 LOC107437772 0
42 LOC107455759 Ptep1.0/2.0 NW_024969627.1 1358733 1375940 + meteorin-like protein aug3.g8000 LOC107455759 0
43 LOC107449413 Ptep1.0/2.0 NW_024971544.1 167438 205991 + runt-related transcription factor 1 aug3.g2762 LOC107449413 0
44 LOC107440157 Ptep1.0/2.0 NW_024970490.1 4863 141355 + zinc finger protein 423 aug3.g14296 LOC107440157 0
45 LOC107445428 Ptep1.0/2.0 NW_024969822.1 115253 166067 - BMP and activin membrane-bound inhibitor homolog aug3.g18541 LOC107445428 0
46 LOC107439785 Ptep1.0/2.0 NW_024970518.1 45428 66827 + homeobox protein engrailed aug3.g14050 LOC107439785 0
47 LOC107457313 Ptep1.0/2.0 NW_024969787.1 743818 747270 - transcription factor Sox-2 aug3.g11061 LOC107457313 0
48 LOC107453597 Ptep1.0/2.0 NW_024969905.1 484247 573318 + fibroblast growth factor 8 aug3.g5611 LOC107453597 0
49 LOC107456770 Ptep1.0/2.0 NW_024969698.1 1178494 1186019 + zinc finger protein 862 aug3.g13082 LOC107456770 0
50 LOC107442288 Ptep1.0/2.0 NW_024969669.1 1306333 1408118 - transcriptional coactivator YAP1 aug3.g16477 LOC107442288 0
51 LOC107436350 Ptep1.0/2.0 NW_024970327.1 158464 317416 + glypican-6 aug3.g11833,aug3.g11486 LOC107436350 0
52 LOC107454377 Ptep1.0/2.0 NW_024969612.1 1643591 1724467 + bone morphogenetic protein receptor type-2-like aug3.g380,aug3.g379,aug3.g22126 LOC107436470,LOC107454377 0
53 LOC107440672 Ptep1.0/2.0 NW_024970030.1 282458 365848 + inactive tyrosine-protein kinase 7 aug3.g27123,aug3.g22652 LOC107440672 0
54 LOC107442863 Ptep1.0/2.0 NW_024969614.1 2450001 2509430 + fibulin-1 aug3.g9913,aug3.g9914 LOC107442863 0
55 LOC107454132 Ptep1.0/2.0 NW_024969759.1 369574 430014 - toll-like receptor Tollo aug3.g6063 LOC107454132 0
56 LOC107439350 Ptep1.0/2.0 NW_024970014.1 656227 670634 + protein 60A aug3.g13706 LOC107439350 0
57 LOC107456960 Ptep1.0/2.0 NW_024969952.1 625314 668845 + suppressor of cytokine signaling 2 aug3.g25340,aug3.g25341 LOC107456960 0
58 LOC107445619 Ptep1.0/2.0 NW_024970202.1 41935 111663 - netrin receptor UNC5C aug3.g18649,aug3.g17685 LOC107445619 0
59 LOC110283330 Ptep1.0/2.0 NW_024972665.1 10652 15547 + uncharacterized LOC110283330 aug3.g21167,aug3.g11138 LOC110283330 0
60 LOC107442925 Ptep1.0/2.0 NW_024970173.1 410777 473979 + bone morphogenetic protein 4-like aug3.g16926 LOC107442925 0
61 LOC107437937 Ptep1.0/2.0 NW_024970240.1 435276 445076 - zinc finger protein Noc aug3.g12685,aug3.g23139 LOC107437937 0
62 LOC107453618 Ptep1.0/2.0 NW_024970067.1 469826 583294 - protein crumbs aug3.g5630 LOC107453618 0
63 LOC107453313 Ptep1.0/2.0 NW_024969861.1 659544 689669 - protein naked cuticle homolog 1 aug3.g5391 LOC107453313 0
64 LOC107436894 Ptep1.0/2.0 NW_024969612.1 1030321 1221533 + zinc finger protein rotund aug3.g394 LOC107436894 0
65 LOC107438758 Ptep1.0/2.0 NW_024970060.1 453865 533783 - epidermal growth factor receptor aug3.g13345,aug3.g13344 LOC107438758 0
66 LOC107450421 Ptep1.0/2.0 NW_024969801.1 3927996 3931755 + DNA-binding protein inhibitor ID-2 aug3.g21189 LOC107450421 0
67 LOC107440240 Ptep1.0/2.0 NW_024970743.1 104190 175589 - protein patched-like aug3.g14374 LOC107440240 0
68 LOC107444955 Ptep1.0/2.0 NW_024969713.1 1085101 1212180 - uncharacterized LOC107444955 aug3.g887,aug3.g886 LOC107444955 0
69 LOC107451348 Ptep1.0/2.0 NW_024970681.1 4220 19077 + uncharacterized LOC107451348 LOC107451348 0
69 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
[Top] [Home Ptep3.0] [Genes/Transcripts] [BLAST] [Info]
Last updated by hiroki oda, 2025.6.12