Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Dataset ID: sn1_st7 | GeneID(LOC) list: cluster_26


word count=49
Gene/Transcript Records
query No.NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
1 LOC122273712 Ptep1.0/2.0 NW_024978972.1 1377 2844 + immunoglobulin superfamily DCC subclass member 3-like aug3.g20464 NA 0
2 LOC107448807 Ptep1.0/2.0 NW_024969609.1 2128119 2152980 + zwei Ig domain protein zig-3 aug3.g20464,aug3.g15195 LOC107448807 0
3 LOC122268431 Ptep1.0/2.0 NW_024972625.1 15349 17755 - zwei Ig domain protein zig-3-like aug3.g20464 LOC107448807 0
4 LOC107440451 Ptep1.0/2.0 NW_024970131.1 207548 230538 - monocarboxylate transporter 11 aug3.g9739 LOC107440451 0
5 LOC107456176 Ptep1.0/2.0 NW_024969851.1 504925 672953 + hemicentin-2 aug3.g25199 LOC107456176 0
6 LOC107446178 Ptep1.0/2.0 NW_024970208.1 254464 297088 + elongation of very long chain fatty acids protein 7 aug3.g18984 LOC107446178 0
7 LOC107448056 Ptep1.0/2.0 NW_024969602.1 68149 112670 - protein henna aug3.g2037,aug3.g5473 LOC107448056 0
8 LOC107454853 Ptep1.0/2.0 NW_024970251.1 115953 195026 - large neutral amino acids transporter small subunit 2 aug3.g6604 LOC107454853 0
9 LOC107447501 Ptep1.0/2.0 NW_024969702.1 1424937 1458756 + uncharacterized LOC107447501 LOC107447501 0
10 LOC107446521 Ptep1.0/2.0 NW_024969740.1 524211 592581 + protein Wnt-11b-2 aug3.g1356 LOC107446521 0
11 LOC107454320 Ptep1.0/2.0 NW_024971717.1 64544 132130 - uncharacterized LOC107454320 aug3.g6175 LOC107454320 0
12 LOC107457039 Ptep1.0/2.0 NW_024969702.1 2286399 2311370 - homeobox protein Hox-A9b aug3.g25355 LOC107457039 0
13 LOC107444058 Ptep1.0/2.0 NW_024969988.1 655739 696415 - putative sodium-dependent multivitamin transporter aug3.g7417 LOC107444058 0
14 LOC107447706 Ptep1.0/2.0 NW_024969693.1 1048537 1124953 + excitatory amino acid transporter 3 aug3.g1887 LOC107447706 0
15 LOC107447905 Ptep1.0/2.0 NW_024969898.1 433275 618479 - sal-like protein 1 aug3.g1988 LOC107447905 0
16 LOC107456427 Ptep1.0/2.0 NW_024970580.1 68165 114072 + tumor necrosis factor receptor superfamily member 10B aug3.g8543 LOC107456427 0
17 LOC107443983 Ptep1.0/2.0 NW_024969708.1 495177 613482 + protein kinase C-binding protein NELL2 aug3.g606 LOC107443983 0
18 LOC107445649 Ptep1.0/2.0 NW_024969752.1 4816945 4959249 + protein Wnt-1 aug3.g10139,aug3.g10138 LOC107445649 0
19 LOC107442497 Ptep1.0/2.0 NW_024970178.1 570255 583598 - uncharacterized LOC107442497 aug3.g27670,aug3.g20943 LOC107442497 0
20 LOC107452883 Ptep1.0/2.0 NW_024969866.1 208885 222519 + achaete-scute homolog 1 aug3.g5047 LOC107452883 0
21 LOC107452230 Ptep1.0/2.0 NW_024970513.1 199406 270352 + sialin aug3.g4604 LOC107452230 0
22 LOC107448833 Ptep1.0/2.0 NW_024969637.1 1405881 1420229 + solute carrier family 25 member 46 aug3.g2435 LOC107448833 0
23 LOC107452006 Ptep1.0/2.0 NW_024969863.1 833764 911467 - transcription factor AP-2-beta aug3.g23531 LOC107452006 0
24 LOC107449167 Ptep1.0/2.0 NW_024969689.1 935532 1117905 - protein O-mannosyl-transferase TMTC2 aug3.g15397 LOC107449167 0
25 LOC107453612 Ptep1.0/2.0 NW_024969989.1 108237 160230 + protein Wnt-8b-like aug3.g5617 LOC107453612 0
26 LOC107444240 Ptep1.0/2.0 NW_024972227.1 972 19734 + uncharacterized LOC107444240 aug3.g17718 LOC107444240 0
27 LOC107446654 Ptep1.0/2.0 NW_024970945.1 45666 87604 - cationic amino acid transporter 3 aug3.g10218,aug3.g19703,aug3.g19702 LOC107446654 0
28 LOC122269180 Ptep1.0/2.0 NW_024969605.1 1808459 1863922 - uncharacterized LOC122269180 aug3.g15598 NA 1e-46
29 LOC107446892 Ptep1.0/2.0 NW_024969669.1 2261411 2305696 + uncharacterized LOC107446892 aug3.g19452 LOC107446892 0
30 LOC107447508 Ptep1.0/2.0 NW_024969702.1 585931 616630 + uncharacterized LOC107447508 LOC107447508 0
31 LOC107446742 Ptep1.0/2.0 NW_024969992.1 536799 562687 - gamma-interferon-inducible lysosomal thiol reductase aug3.g25649 LOC107446742 0
32 LOC107444593 Ptep1.0/2.0 NW_024969786.1 2934917 3143342 + uncharacterized LOC107444593 aug3.g17977,aug3.g20246 LOC107444593 0
33 LOC107447504 Ptep1.0/2.0 NW_024969702.1 638301 654680 - homeobox protein Hox-B5b aug3.g1787,aug3.g1786 LOC107447504 0
34 LOC107447382 Ptep1.0/2.0 NW_024969731.1 865412 866705 - protein lethal(2)essential for life aug3.g1733 LOC107447382 0
35 LOC107448951 Ptep1.0/2.0 NW_024969736.1 1621274 1652709 - BTB/POZ domain-containing protein kctd15-like aug3.g2480 LOC107448951 0
36 LOC107447242 Ptep1.0/2.0 NW_024970614.1 216156 263280 + protein big brother aug3.g1672 LOC107447242 0
37 LOC107443645 Ptep1.0/2.0 NW_024969931.1 302614 394136 - zinc finger protein 672 aug3.g8406,aug3.g17363 LOC107443645 0
38 LOC107455759 Ptep1.0/2.0 NW_024969627.1 1358733 1375940 + meteorin-like protein aug3.g8000 LOC107455759 0
39 LOC107438776 Ptep1.0/2.0 NW_024970179.1 314781 450392 + C-Maf-inducing protein aug3.g13368,aug3.g5824 LOC107438776 0
40 LOC107451770 Ptep1.0/2.0 NW_024970268.1 200360 257176 + uncharacterized LOC107451770 aug3.g4286 LOC107451770 0
41 LOC107446208 Ptep1.0/2.0 NW_024969786.1 3398353 3548296 + ribosomal protein S6 kinase alpha-5 aug3.g1274,aug3.g1273 LOC107446208 0
42 LOC107444128 Ptep1.0/2.0 NW_024970678.1 106502 126303 + X-box-binding protein 1 aug3.g629 LOC107444128 0
43 LOC107451809 Ptep1.0/2.0 NW_024970104.1 533940 595110 + sonic hedgehog protein-like aug3.g4322 LOC107451809 0
44 LOC107449252 Ptep1.0/2.0 NW_024970085.1 80539 109307 - protein Wnt-11 aug3.g2645 LOC107449252 0
45 LOC107437910 Ptep1.0/2.0 NW_024971560.1 24940 53800 + homeobox protein CDX-1-like aug3.g12643 LOC107437910 0
46 LOC107440619 Ptep1.0/2.0 NW_024970318.1 289854 377527 - ETS domain-containing protein Elk-1 aug3.g9766 LOC107440619 0
47 LOC107451021 Ptep1.0/2.0 NW_024969780.1 3736538 3748984 + protein scabrous aug3.g248 LOC107451021 0
48 LOC107447180 Ptep1.0/2.0 NW_024969738.1 599279 704963 + protein Wnt-5b-like aug3.g1632 LOC107447180 0
49 LOC107438682 Ptep1.0/2.0 NW_024970255.1 353416 369850 + tubulin alpha chain, testis-specific aug3.g13286,aug3.g21245 LOC107438682 0
49 records were found.(Max.=1000)

References
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
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Last updated by hiroki oda, 2025.6.12