Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444579 Ptep1.0/2.0 NW_024969889.1 766297 777887 + uncharacterized LOC107444579 aug3.g10062 LOC107444579 0
LOC107444570 Ptep1.0/2.0 NW_024969889.1 781166 854212 - aquaporin-9 aug3.g10061,aug3.g24198 LOC107444570 0
LOC122270823 Ptep1.0/2.0 NW_024970390.1 25697 43258 - uncharacterized LOC122270823 aug3.g10069 LOC107444865 0
LOC122270824 Ptep1.0/2.0 NW_024970390.1 49754 53000 - salivary glue protein Sgs-3-like aug3.g10069 LOC107444865 0
LOC107447565 Ptep1.0/2.0 NW_024970398.1 50626 147495 + NPC intracellular cholesterol transporter 1 aug3.g19831,aug3.g10060 LOC107444560,LOC107447565 0
LOC107447304 Ptep1.0/2.0 NW_024970908.1 166970 191223 + transformation/transcription domain-associated protein aug3.g10065,aug3.g8323,aug3.g19686 LOC107447304 6e-141
LOC107445326 Ptep1.0/2.0 NW_024970995.1 122467 147673 - RNA-binding protein 34 aug3.g1006 LOC107445326 0
LOC107444834 Ptep1.0/2.0 NW_024971431.1 11983 31044 + uncharacterized LOC107444834 aug3.g10065,aug3.g4654 LOC107444834 0
LOC107444825 Ptep1.0/2.0 NW_024971431.1 36340 48132 + pre-mRNA-splicing factor SPF27-like aug3.g10065 LOC107444825 1e-115
LOC107444841 Ptep1.0/2.0 NW_024971431.1 47674 78159 - uncharacterized LOC107444841 aug3.g10067 LOC107444841 5e-113
LOC122272587 Ptep1.0/2.0 NW_024972307.1 1927 31444 + uncharacterized LOC122272587 aug3.g10064 NA 1e-85
LOC122273919 Ptep1.0/2.0 NW_024983346.1 962 2291 + nascent polypeptide-associated complex subunit alpha, muscle-specific form-like aug3.g10066 NA 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02