Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107455103 Ptep1.0/2.0 NW_024969867.1 182554 189140 + 60S ribosomal protein L21 aug3.g10850 LOC107455103 0
LOC107455024 Ptep1.0/2.0 NW_024969867.1 194388 207867 - uncharacterized LOC107455024 aug3.g10851 LOC107455024 0
LOC122269587 Ptep1.0/2.0 NW_024969867.1 213281 224746 - uncharacterized LOC122269587 aug3.g10851 NA 0
LOC107445585 Ptep1.0/2.0 NW_024970198.1 489187 493215 - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 aug3.g1085 LOC107445585 0
LOC107455172 Ptep1.0/2.0 NW_024970423.1 48917 72700 - KICSTOR subunit 2 aug3.g10859 LOC107455172 0
LOC107455194 Ptep1.0/2.0 NW_024970423.1 72745 73956 + protein HEXIM2 aug3.g10858 LOC107455194 0
LOC107455152 Ptep1.0/2.0 NW_024970423.1 77886 83131 - transmembrane protein 141 aug3.g10857 LOC107455152 6e-159
LOC107455144 Ptep1.0/2.0 NW_024970423.1 105173 265498 - collagen alpha chain CG42342 aug3.g10855 LOC107455144 0
LOC107455137 Ptep1.0/2.0 NW_024970423.1 303470 304541 - proteasome subunit alpha type-1 aug3.g20053,aug3.g10853 LOC107455137 0
LOC122268373 Ptep1.0/2.0 NW_024970423.1 304532 357979 + putative elongator complex protein 1 aug3.g20326,aug3.g10852 NA 0
LOC122273600 Ptep1.0/2.0 NW_024977650.1 51 3541 - elongator complex protein 1-like aug3.g10852 NA 0
LOC122273761 Ptep1.0/2.0 NW_024979805.1 975 3141 - uncharacterized LOC122273761 aug3.g10852 NA 4e-43
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02