Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445627 Ptep1.0/2.0 NW_024969645.1 618873 712055 - uncharacterized LOC107445627 aug3.g1111,aug3.g21915 LOC110282090,LOC107445627 0
LOC107457381 Ptep1.0/2.0 NW_024969664.1 1604822 1730370 + rap guanine nucleotide exchange factor 4 aug3.g11112,aug3.g11111 LOC107457381 0
LOC107457382 Ptep1.0/2.0 NW_024969762.1 875405 971318 - DNA ligase 3 aug3.g11114 LOC107457382 0
LOC107457386 Ptep1.0/2.0 NW_024970020.1 164 28790 + kinesin-like protein KIF15 aug3.g11117 LOC107457386 0
LOC107457388 Ptep1.0/2.0 NW_024971503.1 51923 60694 - uncharacterized LOC107457388 aug3.g11119 LOC107457388 0
LOC107451091 Ptep1.0/2.0 NW_024971948.1 6847 36211 + uncharacterized LOC107451091 aug3.g3782,aug3.g11118 LOC107451091 0
LOC122273476 Ptep1.0/2.0 NW_024976438.1 2692 4741 + DNA ligase 3-like aug3.g11114 NA 1e-154
LOC107457383 Ptep1.0/2.0 NW_024980776.1 473 1072 + ras-related protein Rap-2c aug3.g11113 LOC107457383 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02