Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445281 Ptep1.0/2.0 NW_024969687.1 196765 210813 + autophagy-related protein 8f aug3.g1120,aug3.g18439 LOC107445281 0
LOC107446512 Ptep1.0/2.0 NW_024969827.1 325651 346282 - methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial aug3.g11200,aug3.g19234 LOC107446512,LOC107457463 0
LOC107457468 Ptep1.0/2.0 NW_024969975.1 108574 181666 - buccalin aug3.g11206 LOC107457468 0
LOC107457469 Ptep1.0/2.0 NW_024969975.1 346409 393523 - sorting nexin-13 aug3.g11208,aug3.g11209,aug3.g24238 LOC107457469,LOC107442248 0
LOC107439188 Ptep1.0/2.0 NW_024970012.1 684254 746383 + pseudogene aug3.g26718,aug3.g18189,aug3.g11205,aug3.g19 LOC107439188 0
LOC107457467 Ptep1.0/2.0 NW_024970223.1 477714 614149 + prothoracicostatic peptides aug3.g11204 LOC107457467 0
LOC122271620 Ptep1.0/2.0 NW_024970991.1 36993 65347 + uncharacterized LOC122271620 aug3.g11203 NA 0
LOC107457465 Ptep1.0/2.0 NW_024970991.1 70438 104254 + uncharacterized LOC107457465 aug3.g11203 LOC107457465 0
LOC122271619 Ptep1.0/2.0 NW_024970991.1 105886 115207 + uncharacterized LOC122271619 aug3.g11203 LOC110282876 0
LOC107457466 Ptep1.0/2.0 NW_024970991.1 123959 149673 - catalase aug3.g11202 LOC107457466 0
LOC107445675 Ptep1.0/2.0 NW_024972278.1 3938 14942 - autophagy-related protein 8f aug3.g1120 LOC107445675 0
LOC107445279 Ptep1.0/2.0 NW_024972278.1 19660 30413 - uncharacterized LOC107445279 aug3.g18441,aug3.g1120 LOC107445279 0
LOC122273635 Ptep1.0/2.0 NW_024977976.1 809 2850 + sorting nexin-13-like aug3.g11208 LOC107457469 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02