Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269116 Ptep1.0/2.0 NW_024969741.1 1110182 1113401 - uncharacterized LOC122269116 aug3.g50,aug3.g11218 NA 0
LOC107457500 Ptep1.0/2.0 NW_024969741.1 1118269 1134864 - mucin-13 aug3.g11217 LOC107457500 2e-154
LOC107439174 Ptep1.0/2.0 NW_024970106.1 1480198 1507433 - S-adenosylmethionine sensor upstream of mTORC1 aug3.g26701,aug3.g19126,aug3.g2982,aug3.g27260,aug3.g11936,aug3.g23713,aug3.g2296,aug3.g22406,aug3.g8408,aug3.g22914,aug3.g21080,aug3.g20545,aug3.g3761,aug3.g4881,aug3.g19704,aug3.g16522,aug3.g5565,aug3.g11212,aug3.g25515,aug3.g3769,aug3.g3195,aug3.g26523 LOC107439174 0
LOC107457472 Ptep1.0/2.0 NW_024970204.1 794302 810018 - acidic repeat-containing protein aug3.g11214 LOC107457472 0
LOC107436443 Ptep1.0/2.0 NW_024970916.1 60984 86261 - pollen-specific leucine-rich repeat extensin-like protein 1 aug3.g11571,aug3.g11210,aug3.g26088,aug3.g16761,aug3.g25216,aug3.g18234 LOC107436443 0
LOC122273043 Ptep1.0/2.0 NW_024973830.1 9592 10767 - SCAN domain-containing protein 3-like aug3.g11215 NA 0
LOC107445903 Ptep1.0/2.0 NW_024977754.1 2840 3274 + protein ZBED8-like aug3.g21001,aug3.g11215 LOC107445903 0
7 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02