Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107437842 Ptep1.0/2.0 NW_024969805.1 1051719 1099010 - zinc finger protein 512B aug3.g12609 LOC107437842 0
LOC122270523 Ptep1.0/2.0 NW_024970224.1 410756 412051 + uncharacterized LOC122270523 aug3.g12604 NA 2e-37
LOC107440865 Ptep1.0/2.0 NW_024970244.1 346368 348247 - tigger transposable element-derived protein 4-like aug3.g12601 LOC107440865 0
LOC107437830 Ptep1.0/2.0 NW_024970441.1 259053 271037 + protein DGCR6 aug3.g12604 LOC107437830 4e-135
LOC107443669 Ptep1.0/2.0 NW_024970447.1 148951 331626 - uncharacterized LOC107443669 aug3.g17385,aug3.g12608 LOC107443669 0
LOC107437827 Ptep1.0/2.0 NW_024970635.1 187912 202243 + uncharacterized LOC107437827 aug3.g12600 LOC107437827 0
LOC110282984 Ptep1.0/2.0 NW_024970635.1 209361 288526 + uncharacterized protein DDB_G0283697 aug3.g12600 LOC110282984,LOC110282985 0
LOC122271200 Ptep1.0/2.0 NW_024970635.1 290540 297898 + uncharacterized LOC122271200 aug3.g12600 LOC107437822 1e-125
LOC122271395 Ptep1.0/2.0 NW_024970771.1 41549 43611 + uncharacterized LOC122271395 aug3.g12604 NA 5e-50
LOC122272040 Ptep1.0/2.0 NW_024971431.1 43979 45265 - uncharacterized LOC122272040 aug3.g12606 NA 3e-106
LOC122272927 Ptep1.0/2.0 NW_024973328.1 8209 9948 - uncharacterized LOC122272927 aug3.g12604 NA 4e-50
LOC107437836 Ptep1.0/2.0 NW_024973677.1 5326 6617 - uncharacterized LOC107437836 aug3.g12606 LOC107437836 5e-133
LOC122268309 Ptep1.0/2.0 NW_024973677.1 6638 8752 - uncharacterized LOC122268309 aug3.g12606 NA 2e-126
LOC122273017 Ptep1.0/2.0 NW_024973727.1 102 6772 + uncharacterized LOC122273017 aug3.g12600 NA 3e-162
LOC122273247 Ptep1.0/2.0 NW_024974923.1 1074 2563 - uncharacterized LOC122273247 aug3.g12607 NA 0
LOC122273399 Ptep1.0/2.0 NW_024975849.1 2364 3386 - pseudogene aug3.g12601 NA 3e-159
LOC122273767 Ptep1.0/2.0 NW_024979929.1 3586 10393 - uncharacterized LOC122273767 aug3.g12605 NA 0
17 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02