Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107437924 Ptep1.0/2.0 NW_024969620.1 12652 13332 - uncharacterized LOC107437924 aug3.g12671,aug3.g151,aug3.g4138,aug3.g14158,aug3.g25854,aug3.g18687,aug3.g19606 LOC107437924 0
LOC107440110 Ptep1.0/2.0 NW_024969675.1 737933 764627 - 40-kDa huntingtin-associated protein aug3.g14271,aug3.g9818,aug3.g14231,aug3.g12670,aug3.g7979,aug3.g20627,aug3.g14384,aug3.g1350,aug3.g27662,aug3.g8721,aug3.g20462,aug3.g23430,aug3.g7037,aug3.g26629,aug3.g5368,aug3.g8439,aug3.g9624,aug3.g7249,aug3.g5894,aug3.g15802,aug3.g6860,aug3.g2105,aug LOC107440110 0
LOC107446210 Ptep1.0/2.0 NW_024969725.1 42977 133629 + zinc transporter ZIP6 aug3.g1267 LOC107446210 0
LOC122269446 Ptep1.0/2.0 NW_024969821.1 77417 165330 - uncharacterized LOC122269446 aug3.g12671,aug3.g9724 NA 0
LOC122269636 Ptep1.0/2.0 NW_024969884.1 127338 128552 + uncharacterized LOC122269636 aug3.g12671 NA 0
LOC122270493 Ptep1.0/2.0 NW_024970209.1 233730 234947 - uncharacterized LOC122270493 aug3.g12671 NA 0
LOC107437927 Ptep1.0/2.0 NW_024970527.1 57243 76824 - peptidyl-tRNA hydrolase ICT1, mitochondrial aug3.g12675 LOC107442382,LOC107437927 0
LOC122271042 Ptep1.0/2.0 NW_024970527.1 77127 78188 + zinc finger protein 525-like aug3.g12676 NA 7e-141
LOC122271043 Ptep1.0/2.0 NW_024970527.1 82352 96109 - RAD50-interacting protein 1-like aug3.g12676 NA 0
LOC107437930 Ptep1.0/2.0 NW_024970636.1 110508 122862 - peptidoglycan recognition protein aug3.g12678 LOC107437930 0
LOC107437177 Ptep1.0/2.0 NW_024970636.1 124742 152224 - myeloid differentiation primary response protein MyD88 aug3.g12679,aug3.g23017,aug3.g17480 LOC107437177,LOC107437932 0
LOC110282818 Ptep1.0/2.0 NW_024971106.1 39226 43512 + uncharacterized LOC110282818 aug3.g12677 LOC110282818 0
LOC122272369 Ptep1.0/2.0 NW_024971867.1 25499 40836 + RAD50-interacting protein 1-like aug3.g12676 NA 0
LOC122268450 Ptep1.0/2.0 NW_024974749.1 20 1788 + uncharacterized LOC122268450 aug3.g12677 NA 8e-177
LOC107437926 Ptep1.0/2.0 NW_024978467.1 1164 2886 - zinc finger protein 525 aug3.g12676,aug3.g12675 LOC107437926 0
LOC122273786 Ptep1.0/2.0 NW_024980263.1 25 320 + uncharacterized LOC122273786 aug3.g12679 NA 4e-66
LOC122268580 Ptep1.0/2.0 NW_025002312.1 7 1053 - zinc finger protein 28-like aug3.g12676 NA 0
17 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02