Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107438002 Ptep1.0/2.0 NW_024969744.1 632818 639940 + thioredoxin domain-containing protein 17 aug3.g24294,aug3.g12740 LOC107438002 0
LOC107438017 Ptep1.0/2.0 NW_024969744.1 645488 664825 + eukaryotic translation initiation factor 3 subunit G aug3.g12741 LOC107438017 0
LOC107438018 Ptep1.0/2.0 NW_024969744.1 672215 688710 + adenylate kinase isoenzyme 1 aug3.g12743 LOC107438018 0
LOC107438005 Ptep1.0/2.0 NW_024969744.1 691215 692085 - protein lethal(2)essential for life aug3.g12744 LOC107438005 0
LOC107446208 Ptep1.0/2.0 NW_024969786.1 3398353 3548296 + ribosomal protein S6 kinase alpha-5 aug3.g1274,aug3.g1273 LOC107446208 0
LOC107445818 Ptep1.0/2.0 NW_024971221.1 109355 122438 + calcium-dependent secretion activator-like aug3.g12747,aug3.g18770 LOC107445818 8e-171
LOC107439354 Ptep1.0/2.0 NW_024971445.1 36154 59938 - uncharacterized LOC107439354 aug3.g13708,aug3.g12747 LOC107439354 0
LOC107438023 Ptep1.0/2.0 NW_024971584.1 24412 28887 + pleckstrin homology domain-containing family F member 2 aug3.g12749 LOC107438023 0
LOC107443522 Ptep1.0/2.0 NW_024972708.1 14193 18342 - uncharacterized LOC107443522 aug3.g12747 LOC107443522 3e-58
LOC107438020 Ptep1.0/2.0 NW_024972884.1 3877 12703 + uncharacterized LOC107438020 aug3.g12745,aug3.g7995 LOC107438020 0
LOC107438022 Ptep1.0/2.0 NW_024972990.1 102 3154 + splicing factor 3B subunit 2-like aug3.g12746,aug3.g4323,aug3.g17870 LOC107438022 0
LOC122272963 Ptep1.0/2.0 NW_024973507.1 4623 5559 + uncharacterized LOC122272963 aug3.g12747 NA 9e-175
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02