Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268880 Ptep1.0/2.0 NW_024969600.1 7139 67037 + uncharacterized LOC122268880 aug3.g20419,aug3.g2618,aug3.g992,aug3.g9119,aug3.g22620,aug3.g13289 NA 0
LOC107446432 Ptep1.0/2.0 NW_024969774.1 1027680 1046122 - eukaryotic translation initiation factor 4E type 2 aug3.g1328 LOC107446432 0
LOC107438676 Ptep1.0/2.0 NW_024970255.1 263825 287891 + EMI domain-containing protein 1 aug3.g13280 LOC107438676 0
LOC107438677 Ptep1.0/2.0 NW_024970255.1 292385 301061 + lysozyme 1B-like aug3.g13280 LOC107438677 0
LOC107438680 Ptep1.0/2.0 NW_024970255.1 302811 322361 - mitochondrial fission process protein 1 aug3.g13282 LOC107438680 0
LOC110282123 Ptep1.0/2.0 NW_024970255.1 325020 332156 - glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial aug3.g13283 LOC110282123 1e-130
LOC107438681 Ptep1.0/2.0 NW_024970255.1 332225 344052 + pleckstrin homology domain-containing family M member 1 aug3.g13284 LOC107438681 0
LOC107438682 Ptep1.0/2.0 NW_024970255.1 353416 369850 + tubulin alpha chain, testis-specific aug3.g13286,aug3.g21245 LOC107438682 0
LOC107438683 Ptep1.0/2.0 NW_024970255.1 382395 392372 + serine/arginine-rich splicing factor 1 aug3.g13288 LOC107438683 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02