Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107439437 Ptep1.0/2.0 NW_024969705.1 928437 939481 + ATP-dependent Clp protease proteolytic subunit aug3.g13779 LOC107439437 0
LOC107439434 Ptep1.0/2.0 NW_024969705.1 940597 1001523 - calcitonin receptor aug3.g13778 LOC107439436,LOC107439434 0
LOC107438089 Ptep1.0/2.0 NW_024970316.1 82897 84003 - uncharacterized LOC107438089 aug3.g12815,aug3.g16014,aug3.g2002,aug3.g18903,aug3.g13775 LOC107438089 0
LOC107446555 Ptep1.0/2.0 NW_024970340.1 114188 169451 + probable ATP-dependent RNA helicase DDX23 aug3.g1377 LOC107446555 0
LOC107436711 Ptep1.0/2.0 NW_024970631.1 188811 192925 - E3 SUMO-protein ligase ZBED1 aug3.g22954,aug3.g13777,aug3.g22569,aug3.g12524,aug3.g14302 LOC107436711 0
LOC107441740 Ptep1.0/2.0 NW_024970900.1 90710 178170 + sialin aug3.g13771,aug3.g27427,aug3.g13769 LOC107439430,LOC107441740 0
LOC107439432 Ptep1.0/2.0 NW_024971178.1 2613 16185 + zinc transporter 2 aug3.g13773,aug3.g13774 LOC107439432 0
LOC122272159 Ptep1.0/2.0 NW_024971576.1 1978 18962 - uncharacterized LOC122272159 aug3.g13774 NA 6e-168
LOC122272158 Ptep1.0/2.0 NW_024971576.1 24460 27708 - uncharacterized LOC122272158 aug3.g13774 LOC107439432 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02