Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107440100 Ptep1.0/2.0 NW_024969813.1 20100 37825 + long-chain-fatty-acid--CoA ligase 5-like aug3.g13803 LOC107440100 0
LOC122269417 Ptep1.0/2.0 NW_024969813.1 38594 47287 + long-chain-fatty-acid--CoA ligase 1-like aug3.g13804 NA 0
LOC122269416 Ptep1.0/2.0 NW_024969813.1 51497 52729 - uncharacterized LOC122269416 aug3.g13805 NA 0
LOC107439488 Ptep1.0/2.0 NW_024969813.1 52831 65911 + anaphase-promoting complex subunit 15-like aug3.g13806 LOC107439488 0
LOC107439482 Ptep1.0/2.0 NW_024969813.1 65671 83314 - dehydrogenase/reductase SDR family member on chromosome X aug3.g13807 LOC107439482 0
LOC107439483 Ptep1.0/2.0 NW_024969813.1 85280 103105 + probable WRKY transcription factor protein 1 aug3.g13808 LOC107439483 0
LOC107439489 Ptep1.0/2.0 NW_024969813.1 103130 111239 - zinc finger matrin-type protein 2 aug3.g13809 LOC107439489 0
LOC107446561 Ptep1.0/2.0 NW_024970340.1 276515 329441 + small conductance calcium-activated potassium channel protein aug3.g1380,aug3.g23104 LOC107446561 0
LOC107439480 Ptep1.0/2.0 NW_024970760.1 153199 173414 - myeloid leukemia factor 1 aug3.g13802 LOC107439480 0
LOC107439479 Ptep1.0/2.0 NW_024970760.1 173686 190006 + DNA polymerase kappa aug3.g13801 LOC107439479 0
LOC107439481 Ptep1.0/2.0 NW_024976366.1 334 3568 - long-chain-fatty-acid--CoA ligase 5 aug3.g13803,aug3.g23311 LOC107439481 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02