Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107439505 Ptep1.0/2.0 NW_024970227.1 15418 47566 + G-protein-signaling modulator 2 aug3.g13821 LOC107439505 0
LOC107439506 Ptep1.0/2.0 NW_024970227.1 155657 226298 + pituitary homeobox x aug3.g13822 LOC107439506 0
LOC107439507 Ptep1.0/2.0 NW_024970227.1 335681 401333 + protein spaetzle 3 aug3.g13823 LOC107439507 0
LOC107439511 Ptep1.0/2.0 NW_024970335.1 252134 273347 + ATP-dependent DNA helicase PIF1 aug3.g13829 LOC107439511 0
LOC107445304 Ptep1.0/2.0 NW_024970335.1 276166 322941 - sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 aug3.g18455,aug3.g13828 LOC107445304 0
LOC107446560 Ptep1.0/2.0 NW_024970340.1 343951 359334 + 40S ribosomal protein S13 aug3.g1382 LOC107446560 0
LOC107439503 Ptep1.0/2.0 NW_024971188.1 67124 107337 - nose resistant to fluoxetine protein 6-like aug3.g13820 LOC107439503 0
LOC107439508 Ptep1.0/2.0 NW_024971840.1 2796 9209 + uncharacterized LOC107439508 aug3.g13827,aug3.g13826 LOC107439508 0
LOC122272349 Ptep1.0/2.0 NW_024971840.1 19514 40589 - homeobox protein ceh-8-like aug3.g13827 NA 0
LOC122273183 Ptep1.0/2.0 NW_024974589.1 70 2799 + uncharacterized LOC122273183 aug3.g8392,aug3.g13824 NA 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02