Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446594 Ptep1.0/2.0 NW_024971095.1 68544 83146 - transmembrane protein 41B aug3.g1395 LOC107446594 0
LOC107439670 Ptep1.0/2.0 NW_024971191.1 34271 46274 + uncharacterized LOC107439670 aug3.g13952 LOC107439670 0
LOC107439668 Ptep1.0/2.0 NW_024971191.1 55637 64205 - uncharacterized LOC107439668 aug3.g13953 LOC107439668 0
LOC107439665 Ptep1.0/2.0 NW_024971393.1 55725 73764 + uncharacterized LOC107439665 aug3.g13950 LOC107439665 0
LOC122272006 Ptep1.0/2.0 NW_024971393.1 74558 77591 + dynein axonemal heavy chain 10-like aug3.g13950 LOC107439665 0
LOC122268407 Ptep1.0/2.0 NW_024971393.1 82467 97239 + dynein axonemal heavy chain 10-like aug3.g13950 NA 0
LOC122272381 Ptep1.0/2.0 NW_024971913.1 20270 38087 + uncharacterized LOC122272381 aug3.g13952 NA 0
LOC122272453 Ptep1.0/2.0 NW_024972040.1 28593 38164 - uncharacterized LOC122272453 aug3.g13955 NA 2e-48
LOC122272492 Ptep1.0/2.0 NW_024972112.1 5865 8204 - guanine nucleotide-binding protein subunit beta-like protein aug3.g13959 LOC107439675 0
LOC107439673 Ptep1.0/2.0 NW_024972112.1 47805 60433 + uncharacterized LOC107439673 aug3.g13958 LOC107439673 0
LOC107439672 Ptep1.0/2.0 NW_024972112.1 142331 148829 - serine/threonine-protein kinase pim-3 aug3.g13957 LOC107439672 0
LOC107439675 Ptep1.0/2.0 NW_024973205.1 6055 10682 - guanine nucleotide-binding protein subunit beta-2-like 1 aug3.g13959 LOC107439675 0
LOC122273370 Ptep1.0/2.0 NW_024975683.1 4342 4851 - zinc finger BED domain-containing protein 5-like aug3.g9688,aug3.g13951 NA 0
LOC122273685 Ptep1.0/2.0 NW_024978537.1 6287 7055 - uncharacterized LOC122273685 aug3.g13959 NA 1e-62
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02