Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446820 Ptep1.0/2.0 NW_024969601.1 1533281 1677948 - glutamate receptor ionotropic, kainate 2 aug3.g1473,aug3.g15743 LOC107446820 0
LOC107440686 Ptep1.0/2.0 NW_024970148.1 518901 520245 - uncharacterized LOC107440686 aug3.g14739 LOC107440686 2e-98
LOC107440679 Ptep1.0/2.0 NW_024970259.1 325303 346686 - thyroid receptor-interacting protein 11 aug3.g14736,aug3.g5187 LOC107440679 0
LOC107440677 Ptep1.0/2.0 NW_024970259.1 394982 420835 - class E basic helix-loop-helix protein 23 aug3.g14737 LOC107440677 0
LOC107440678 Ptep1.0/2.0 NW_024970259.1 429086 460024 - astacin-like metalloprotease toxin 5 aug3.g14738 LOC107440678 0
LOC107440676 Ptep1.0/2.0 NW_024970932.1 131790 193060 + uncharacterized LOC107440676 aug3.g14731 LOC107440676 0
LOC107440674 Ptep1.0/2.0 NW_024970932.1 210331 240284 - N-terminal kinase-like protein aug3.g14733,aug3.g14732 LOC107440674 0
LOC107440675 Ptep1.0/2.0 NW_024970932.1 240534 253413 + uncharacterized LOC107440675 aug3.g14734 LOC107440675 0
LOC122272255 Ptep1.0/2.0 NW_024971697.1 43363 44307 - uncharacterized LOC122272255 aug3.g14739 NA 2e-68
LOC122272687 Ptep1.0/2.0 NW_024972516.1 6640 8322 + pseudogene aug3.g14739,aug3.g13581 NA 0
LOC122273721 Ptep1.0/2.0 NW_024979104.1 265 2631 - uncharacterized LOC122273721 aug3.g14732 NA 7e-141
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02