Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446842 Ptep1.0/2.0 NW_024969795.1 332945 409367 + uncharacterized LOC107446842 aug3.g1487,aug3.g1486 LOC107446842 0
LOC107440842 Ptep1.0/2.0 NW_024970477.1 11833 85084 - zinc finger protein ush aug3.g14866 LOC107440842 0
LOC107440844 Ptep1.0/2.0 NW_024970477.1 96048 115379 - uncharacterized LOC107440844 aug3.g14865 LOC107440844 0
LOC107440841 Ptep1.0/2.0 NW_024970477.1 131769 143958 - protein C19orf12 homolog aug3.g14864 LOC107440841 0
LOC107440840 Ptep1.0/2.0 NW_024970477.1 159069 177775 - low-density lipoprotein receptor-related protein 3 aug3.g14862 LOC107440840 0
LOC107440839 Ptep1.0/2.0 NW_024970477.1 177835 207572 + pachytene checkpoint protein 2 homolog aug3.g14861 LOC107440839 0
LOC107440837 Ptep1.0/2.0 NW_024970477.1 211401 321962 - glutamate synthase [NADH] aug3.g14860,aug3.g14861 LOC107440837 0
LOC107442536 Ptep1.0/2.0 NW_024971540.1 18493 75042 + fibrillin-2-like aug3.g14867,aug3.g18855 LOC107442536 0
LOC107440845 Ptep1.0/2.0 NW_024971981.1 712 12989 + neurogenic locus notch homolog protein 1 aug3.g16657,aug3.g23132,aug3.g14867 LOC107440845 0
LOC122272727 Ptep1.0/2.0 NW_024972649.1 5913 18984 - fibropellin-1-like aug3.g14867 LOC107440845 0
LOC122268453 Ptep1.0/2.0 NW_024975336.1 1187 3872 + cell wall protein DAN4-like aug3.g14867 NA 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02