Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447504 Ptep1.0/2.0 NW_024969702.1 638301 654680 - homeobox protein Hox-B5b aug3.g1787,aug3.g1786 LOC107447504 0
LOC107444454 Ptep1.0/2.0 NW_024970058.1 481299 536161 + Down syndrome cell adhesion molecule homolog aug3.g17879,aug3.g21555 LOC107444454 0
LOC107444449 Ptep1.0/2.0 NW_024970289.1 32978 52913 + zinc finger and BTB domain-containing protein 49 aug3.g17872 LOC107444449 0
LOC107444448 Ptep1.0/2.0 NW_024970289.1 63229 68103 + ribonuclease P protein subunit p14 aug3.g17873 LOC107444448 0
LOC107444446 Ptep1.0/2.0 NW_024970289.1 68076 171347 - dynein heavy chain, cytoplasmic aug3.g17874,aug3.g22575,aug3.g22468 LOC107444446,LOC107456659 0
LOC107444445 Ptep1.0/2.0 NW_024970289.1 184732 190510 + uncharacterized LOC107444445 aug3.g17876 LOC107444445 0
LOC122271226 Ptep1.0/2.0 NW_024970651.1 232012 232660 - homeobox protein Hox-C5a-like aug3.g1787 NA 0
LOC107444433 Ptep1.0/2.0 NW_024970954.1 158626 162608 + splicing factor 3B subunit 2-like aug3.g17870 LOC107444433 0
LOC107438022 Ptep1.0/2.0 NW_024972990.1 102 3154 + splicing factor 3B subunit 2-like aug3.g12746,aug3.g4323,aug3.g17870 LOC107438022 0
LOC122272925 Ptep1.0/2.0 NW_024973327.1 1493 5486 - uncharacterized LOC122272925 aug3.g17870 NA 0.0000006
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02