Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447586 Ptep1.0/2.0 NW_024970391.1 311773 336941 + U4/U6 small nuclear ribonucleoprotein Prp3 aug3.g1822 LOC107447586 0
LOC122270827 Ptep1.0/2.0 NW_024970391.1 338118 342399 + U4/U6 small nuclear ribonucleoprotein Prp3-like aug3.g1822 LOC107447586 0
LOC107444975 Ptep1.0/2.0 NW_024971092.1 61732 67115 - TELO2-interacting protein 1 homolog aug3.g18229 LOC107444975 0
LOC107444973 Ptep1.0/2.0 NW_024971092.1 72811 88543 - C-1-tetrahydrofolate synthase, cytoplasmic aug3.g18227 LOC107444973 0
LOC122271730 Ptep1.0/2.0 NW_024971104.1 1976 22875 + fibrillin-1-like aug3.g18223 NA 0
LOC107444967 Ptep1.0/2.0 NW_024971104.1 26909 43224 + delta and Notch-like epidermal growth factor-related receptor aug3.g18223 LOC107444967 0
LOC107438357 Ptep1.0/2.0 NW_024971104.1 46076 101097 - neurogenic locus Notch protein aug3.g14783,aug3.g18905,aug3.g18222,aug3.g7947 LOC107438357,LOC107444966,LOC107440730 0
LOC110282542 Ptep1.0/2.0 NW_024971417.1 83856 87618 - copia protein aug3.g2202,aug3.g3891,aug3.g14510,aug3.g20883,aug3.g18224 LOC110282542 0
LOC107442534 Ptep1.0/2.0 NW_024971981.1 40015 83209 + fibrillin-1-like aug3.g18223,aug3.g16654,aug3.g16655 LOC107442538,LOC107442534,LOC107442537 0
LOC107444968 Ptep1.0/2.0 NW_024972518.1 13154 22945 + cell wall protein DAN4 aug3.g18223 LOC107444968 0
LOC122272700 Ptep1.0/2.0 NW_024972552.1 53 9389 + bifunctional protein FolD-like aug3.g18226,aug3.g18228 NA 1e-118
LOC122273032 Ptep1.0/2.0 NW_024973803.1 19 4007 - uncharacterized LOC122273032 aug3.g18225 NA 1e-37
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02