Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447688 Ptep1.0/2.0 NW_024969709.1 160942 176500 + uncharacterized LOC107447688 aug3.g1864 LOC107447688 0
LOC107445617 Ptep1.0/2.0 NW_024969914.1 839434 1002125 + hypoxia-inducible factor 1-alpha aug3.g18646,aug3.g5039 LOC107452880,LOC107445617 0
LOC107445612 Ptep1.0/2.0 NW_024970201.1 134094 367926 + neurobeachin aug3.g12182,aug3.g24475,aug3.g18642,aug3.g24905 LOC107445612,LOC107446264 0
LOC107445614 Ptep1.0/2.0 NW_024970201.1 373049 442090 - sodium- and chloride-dependent GABA transporter 1-like aug3.g18643 LOC107445614 0
LOC107445615 Ptep1.0/2.0 NW_024970201.1 464059 489214 + exosome complex exonuclease RRP44 aug3.g18644 LOC107445615 0
LOC107445616 Ptep1.0/2.0 NW_024970201.1 491553 493842 - exonuclease 3'-5' domain-containing protein 2-like aug3.g18645,aug3.g10749 LOC107445616 0
LOC107445620 Ptep1.0/2.0 NW_024970202.1 31160 39759 + uncharacterized LOC107445620 aug3.g18648 LOC107445620 0
LOC107445619 Ptep1.0/2.0 NW_024970202.1 41935 111663 - netrin receptor UNC5C aug3.g18649,aug3.g17685 LOC107445619 0
LOC107445618 Ptep1.0/2.0 NW_024970268.1 17091 43123 - glycine-rich cell wall structural protein 1.8-like aug3.g18647 LOC107445618 0
LOC107457525 Ptep1.0/2.0 NW_024970358.1 61402 77615 - rho-related GTP-binding protein RhoE-like aug3.g11259,aug3.g10986,aug3.g6798,aug3.g12449,aug3.g6435,aug3.g18641,aug3.g27190,aug3.g23455,aug3.g14611,aug3.g11493 LOC107457525 0
LOC122274098 Ptep1.0/2.0 NW_024992031.1 16 1343 - neurobeachin-like aug3.g18642 LOC107445612 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02