Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447712 Ptep1.0/2.0 NW_024969693.1 1353488 1354346 - 28S ribosomal protein S18b, mitochondrial aug3.g1877 LOC107447712 0
LOC107445827 Ptep1.0/2.0 NW_024970301.1 16540 30813 - uncharacterized LOC107445827 aug3.g18776 LOC107445827 0
LOC107445825 Ptep1.0/2.0 NW_024970301.1 30793 46271 + brain protein I3 aug3.g24202,aug3.g18777 LOC107445825,LOC107441914 0
LOC122270655 Ptep1.0/2.0 NW_024970301.1 46893 54090 - fas-binding factor 1-like aug3.g18778 NA 9e-124
LOC107445829 Ptep1.0/2.0 NW_024970301.1 56669 89642 - fas-binding factor 1 homolog aug3.g18778 LOC107445829 0
LOC107445826 Ptep1.0/2.0 NW_024970301.1 109089 168945 + protein singed aug3.g19664,aug3.g18779 LOC107445826 0
LOC122268378 Ptep1.0/2.0 NW_024970522.1 1009 15822 - uncharacterized LOC122268378 aug3.g18771 LOC107449032 2e-155
LOC107445824 Ptep1.0/2.0 NW_024970522.1 16114 39773 + SURP and G-patch domain-containing protein 1 aug3.g18772 LOC107445824 0
LOC107445821 Ptep1.0/2.0 NW_024970522.1 40301 47774 - 28S ribosomal protein S36, mitochondrial aug3.g18773 LOC107445821 0
LOC107445823 Ptep1.0/2.0 NW_024970522.1 58209 69184 - brain tumor protein aug3.g18774 LOC107445823 0
LOC107445818 Ptep1.0/2.0 NW_024971221.1 109355 122438 + calcium-dependent secretion activator-like aug3.g12747,aug3.g18770 LOC107445818 8e-171
LOC107446570 Ptep1.0/2.0 NW_024972080.1 963 46329 - protein lifeguard 1-like aug3.g18771 LOC107446570 0
LOC122273085 Ptep1.0/2.0 NW_024974035.1 7 8283 - uncharacterized LOC122273085 aug3.g18773 NA 2e-98
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02