Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445899 Ptep1.0/2.0 NW_024969636.1 625069 630372 + uncharacterized LOC107445899 aug3.g344,aug3.g18841,aug3.g21272,aug3.g2922,aug3.g21271 LOC107445899 0
LOC107447705 Ptep1.0/2.0 NW_024969693.1 1178655 1203434 + T-complex protein 1 subunit delta aug3.g1884 LOC107447705 0
LOC107445970 Ptep1.0/2.0 NW_024970581.1 165548 183426 - uncharacterized LOC107445970 aug3.g18849 LOC107445970 0
LOC107445969 Ptep1.0/2.0 NW_024970581.1 187056 234283 + glycine dehydrogenase (decarboxylating), mitochondrial aug3.g18848 LOC107445969 0
LOC107438650 Ptep1.0/2.0 NW_024970581.1 237125 294686 - mediator of RNA polymerase II transcription subunit 14 aug3.g13257,aug3.g18847 LOC107445968,LOC107438650 0
LOC107445904 Ptep1.0/2.0 NW_024971225.1 86955 109988 + cryptochrome-1 aug3.g18846 LOC107445904 0
LOC107445905 Ptep1.0/2.0 NW_024971225.1 114985 128930 - 39S ribosomal protein L48, mitochondrial aug3.g18845 LOC107445905 0
LOC122271852 Ptep1.0/2.0 NW_024971225.1 143421 146536 + uncharacterized LOC122271852 aug3.g18844 NA 1e-146
LOC107445901 Ptep1.0/2.0 NW_024971794.1 6390 50183 - charged multivesicular body protein 7 aug3.g18843 LOC107445901 1e-104
LOC122272960 Ptep1.0/2.0 NW_024973486.1 8983 11064 + charged multivesicular body protein 7-like aug3.g18843 NA 2e-104
LOC122273106 Ptep1.0/2.0 NW_024974147.1 305 6935 + glycine dehydrogenase (decarboxylating), mitochondrial-like aug3.g18848 NA 4e-135
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02