Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445414 Ptep1.0/2.0 NW_024969696.1 516756 525852 + uncharacterized LOC107445414 aug3.g1034,aug3.g23682,aug3.g19048,aug3.g16307 LOC107445414 0
LOC107443006 Ptep1.0/2.0 NW_024969891.1 635818 654564 - tigger transposable element-derived protein 4-like aug3.g9934,aug3.g10105,aug3.g18192,aug3.g6186,aug3.g17788,aug3.g9969,aug3.g192,aug3.g12457,aug3.g22897,aug3.g1740,aug3.g20926,aug3.g19047,aug3.g14633,aug3.g5371,aug3.g25913,aug3.g21109,aug3.g9935,aug3.g1678,aug3.g15883,aug3.g21072,aug3.g10535,aug3.g13475, LOC107443006 0
LOC107447737 Ptep1.0/2.0 NW_024970487.1 170949 221346 + tubulin alpha-1A chain aug3.g1904 LOC107447737 0
LOC107446263 Ptep1.0/2.0 NW_024970740.1 3415 5657 + gastrula zinc finger protein XlCGF7.1 aug3.g19040 LOC107446263 0
LOC107446258 Ptep1.0/2.0 NW_024970740.1 13303 24209 - 60S ribosomal protein L27a aug3.g19042 LOC107446258 0
LOC107446257 Ptep1.0/2.0 NW_024970740.1 24357 34427 + prefoldin subunit 5 aug3.g19043 LOC107446257 0
LOC107446259 Ptep1.0/2.0 NW_024970740.1 37583 66494 - glutamate receptor U1 aug3.g19044 LOC107446259 0
LOC107446260 Ptep1.0/2.0 NW_024970740.1 73663 88540 - exopolyphosphatase PRUNE1 aug3.g19045 LOC107446260 0
LOC107446261 Ptep1.0/2.0 NW_024970740.1 88566 99249 + U6 snRNA-associated Sm-like protein LSm6 aug3.g19046 LOC107446261 0
LOC122271339 Ptep1.0/2.0 NW_024970740.1 108376 149759 + otoferlin-like aug3.g19047 NA 0
LOC107446254 Ptep1.0/2.0 NW_024970740.1 152456 169556 + otoferlin aug3.g19047 LOC107446254 0
LOC110283000 Ptep1.0/2.0 NW_024970740.1 174539 182433 + uncharacterized LOC110283000 aug3.g19048 LOC110283000 0
LOC122271340 Ptep1.0/2.0 NW_024970740.1 188068 195792 + protein CEBPZOS-like aug3.g19049 NA 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02