Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268840 Ptep1.0/2.0 NW_024969687.1 1289555 1321510 + uncharacterized LOC122268840 aug3.g19616 NA 2e-54
LOC107447225 Ptep1.0/2.0 NW_024969687.1 1328189 1580495 - sodium/calcium exchanger 3 aug3.g19935,aug3.g19615 LOC107447225,LOC110283089 0
LOC107447219 Ptep1.0/2.0 NW_024969990.1 170534 460178 + hemicentin-2 aug3.g14565,aug3.g19610,aug3.g14566 LOC107447219 0
LOC122270093 Ptep1.0/2.0 NW_024970047.1 232500 238841 + speckle-type POZ protein-like aug3.g1961 NA 0
LOC107447857 Ptep1.0/2.0 NW_024970047.1 249309 251104 - speckle-type POZ protein B-like aug3.g1962,aug3.g27593,aug3.g19033,aug3.g1961,aug3.g21829,aug3.g1963,aug3.g1964 LOC107447857 0
LOC107447221 Ptep1.0/2.0 NW_024970717.1 69332 102250 - RNA helicase Mov10l1 aug3.g19611 LOC107447221 0
LOC107447223 Ptep1.0/2.0 NW_024970717.1 102755 105496 - PHD finger protein 14 aug3.g19611 LOC107447223 4e-32
LOC107447224 Ptep1.0/2.0 NW_024970717.1 105690 118437 + Golgi phosphoprotein 3 homolog sauron aug3.g19612 LOC107447224 0
LOC107451411 Ptep1.0/2.0 NW_024970717.1 140653 142184 - RNA pseudouridylate synthase domain-containing protein 2-like aug3.g19613,aug3.g21480 LOC107451411 0
LOC107447227 Ptep1.0/2.0 NW_024970957.1 156993 171498 - ADP-ribosylation factor-like protein 1 aug3.g19619 LOC107447227 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02