Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447564 Ptep1.0/2.0 NW_024970398.1 1610 29005 + lysophospholipid acyltransferase 2 aug3.g19832 LOC107447564 0
LOC107447565 Ptep1.0/2.0 NW_024970398.1 50626 147495 + NPC intracellular cholesterol transporter 1 aug3.g19831,aug3.g10060 LOC107444560,LOC107447565 0
LOC107436727 Ptep1.0/2.0 NW_024970674.1 43517 78037 - uncharacterized LOC107436727 aug3.g22959,aug3.g19408,aug3.g19839 LOC107436727 0
LOC107447904 Ptep1.0/2.0 NW_024970795.1 8891 16553 + uncharacterized LOC107447904 aug3.g1983 LOC107447904 0
LOC107438316 Ptep1.0/2.0 NW_024970997.1 162602 191447 - probable RNA-directed DNA polymerase from transposon BS aug3.g17766,aug3.g19838 LOC107438316 0
LOC107447567 Ptep1.0/2.0 NW_024970997.1 203861 204603 - isatin hydrolase-like aug3.g19834 LOC107447567 0
LOC107454680 Ptep1.0/2.0 NW_024971059.1 26572 54684 + putative inorganic phosphate cotransporter aug3.g6451,aug3.g19830 LOC107454680,LOC107447562 0
LOC107443355 Ptep1.0/2.0 NW_024973481.1 5777 8006 - isatin hydrolase-like aug3.g17294,aug3.g20646,aug3.g19834 LOC107443355 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02