Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448180 Ptep1.0/2.0 NW_024969692.1 13044 25276 - uncharacterized LOC107448180 aug3.g2117 LOC107448180 0
LOC107450399 Ptep1.0/2.0 NW_024969819.1 1955747 1971788 + uncharacterized LOC107450399 aug3.g21176 LOC107450399 5e-140
LOC122269947 Ptep1.0/2.0 NW_024969991.1 618832 622985 - uncharacterized LOC122269947 aug3.g21177 NA 0
LOC107437086 Ptep1.0/2.0 NW_024970056.1 569917 591996 + solute carrier organic anion transporter family member 4A1 aug3.g12031,aug3.g21172 LOC107437086,LOC107450376 0
LOC107450404 Ptep1.0/2.0 NW_024970478.1 204432 234580 - uncharacterized LOC107450404 aug3.g21179 LOC107450404 0
LOC110282546 Ptep1.0/2.0 NW_024970580.1 201995 247009 + serine/threonine-protein phosphatase CPPED1-like aug3.g21175 LOC110282546 4e-148
LOC107441248 Ptep1.0/2.0 NW_024970580.1 215173 257025 - sulfotransferase ssu-1 aug3.g21174 LOC107441248 0
LOC110283501 Ptep1.0/2.0 NW_024970593.1 48151 49095 + E3 ubiquitin-protein ligase makorin-1-like aug3.g15148,aug3.g21170,aug3.g15150 LOC110283501 0
LOC107444761 Ptep1.0/2.0 NW_024970653.1 165051 226414 - carnitine O-palmitoyltransferase 1, liver isoform aug3.g18084,aug3.g21178 LOC107444761,LOC110282898 0
LOC122271307 Ptep1.0/2.0 NW_024970710.1 250201 252751 - uncharacterized LOC122271307 aug3.g2117 NA 9e-150
LOC107450402 Ptep1.0/2.0 NW_024972706.1 9896 21873 - uncharacterized LOC107450402 aug3.g21177 LOC107450402 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02