Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448201 Ptep1.0/2.0 NW_024970021.1 477054 710557 + Down syndrome cell adhesion molecule homolog aug3.g2126 LOC107448201 0
LOC107450689 Ptep1.0/2.0 NW_024970607.1 180437 260234 + probable chitinase 10 aug3.g21266,aug3.g16660 LOC107450689 0
LOC107442035 Ptep1.0/2.0 NW_024970607.1 262453 275741 - DNA-directed RNA polymerases I, II, and III subunit RPABC2 aug3.g21265 LOC107442035 7e-124
LOC107451326 Ptep1.0/2.0 NW_024971028.1 37782 72884 + serine/threonine-protein kinase PAK mbt aug3.g21268,aug3.g3962 LOC107450692,LOC107451326 0
LOC107445770 Ptep1.0/2.0 NW_024971028.1 81241 96674 - lysosome-associated membrane glycoprotein 5 aug3.g18740,aug3.g21267 LOC107445770 0
LOC122272167 Ptep1.0/2.0 NW_024971583.1 54003 54941 + uncharacterized LOC122272167 aug3.g21260 NA 3e-74
LOC107436200 Ptep1.0/2.0 NW_024971928.1 9808 42697 - cyclin-dependent kinase 4 aug3.g11377,aug3.g21263 LOC107436200 0
LOC122273185 Ptep1.0/2.0 NW_024974600.1 253 2556 - serine/threonine-protein kinase PAK mbt-like aug3.g21268 LOC107451326 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02