Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107439574 Ptep1.0/2.0 NW_024969593.1 293938 419881 - tyrosine-protein phosphatase 10D aug3.g13884,aug3.g2169 LOC107439574 0
LOC122269965 Ptep1.0/2.0 NW_024969617.1 139114 139689 - uncharacterized LOC122269965 aug3.g21693 NA 0
LOC107444016 Ptep1.0/2.0 NW_024969765.1 348765 408470 - uncharacterized LOC107444016 aug3.g17613,aug3.g23084,aug3.g5536,aug3.g715,aug3.g12559,aug3.g4135,aug3.g10940,aug3.g27929,aug3.g11329,aug3.g5784,aug3.g21693,aug3.g18243,aug3.g1982,aug3.g24226,aug3.g7007,aug3.g691,aug3.g4537,aug3.g23563,aug3.g20932,aug3.g1220,aug3.g2490,aug3.g14337,aug LOC107444016,LOC107438385 0
LOC122269267 Ptep1.0/2.0 NW_024969780.1 2390027 2391415 - uncharacterized LOC122269267 aug3.g18819,aug3.g9816,aug3.g3355,aug3.g21699,aug3.g4249,aug3.g26060 NA 0
LOC107444424 Ptep1.0/2.0 NW_024969834.1 292268 293181 + uncharacterized LOC107444424 aug3.g11589,aug3.g6444,aug3.g23739,aug3.g17869,aug3.g15569,aug3.g21698,aug3.g21456 LOC107444424 0
LOC107436995 Ptep1.0/2.0 NW_024969905.1 838275 879967 + myelin expression factor 2 aug3.g11949,aug3.g21695 LOC107436995,LOC107452231 0
LOC107448266 Ptep1.0/2.0 NW_024971755.1 191 8747 + tyrosine-protein phosphatase 10D aug3.g2169 LOC107448266 0
LOC122272304 Ptep1.0/2.0 NW_024971755.1 24283 48972 + tyrosine-protein phosphatase 10D-like aug3.g2169 NA 0
LOC122273170 Ptep1.0/2.0 NW_024974525.1 3200 4183 - probable DNA polymerase aug3.g21697 NA 0
LOC122273171 Ptep1.0/2.0 NW_024974525.1 5239 6645 - uncharacterized LOC122273171 aug3.g21697,aug3.g21418 NA 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02