Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107452421 Ptep1.0/2.0 NW_024969598.1 746983 766614 + dihydroorotate dehydrogenase (quinone), mitochondrial aug3.g21737 LOC107452421 0
LOC107452422 Ptep1.0/2.0 NW_024969598.1 767869 793284 - short transient receptor potential channel 4-associated protein-like aug3.g21736,aug3.g20477 LOC107452422 0
LOC107442913 Ptep1.0/2.0 NW_024969705.1 441483 479776 - importin subunit alpha-5 aug3.g16923,aug3.g21739,aug3.g9268,aug3.g19295,aug3.g21387 LOC107442913 0
LOC107451513 Ptep1.0/2.0 NW_024969780.1 591227 792095 + LIM domain-binding protein 2 aug3.g21506,aug3.g21735 LOC107451513 0
LOC107448365 Ptep1.0/2.0 NW_024970018.1 10237 54679 + DNA mismatch repair protein Msh6 aug3.g2173 LOC107448365 0
LOC122270811 Ptep1.0/2.0 NW_024970378.1 95840 97376 + pseudogene aug3.g2173 NA 0
LOC122271205 Ptep1.0/2.0 NW_024970637.1 280980 314313 - DNA mismatch repair protein Msh6-like aug3.g2173,aug3.g22662 LOC107448365 0
LOC122271206 Ptep1.0/2.0 NW_024970637.1 320304 322218 - uncharacterized LOC122271206 aug3.g2173 NA 0
LOC107455586 Ptep1.0/2.0 NW_024970637.1 323498 324352 - uncharacterized LOC107455586 aug3.g2173 LOC107455586 0
LOC107452407 Ptep1.0/2.0 NW_024970946.1 146386 150764 - Down syndrome cell adhesion molecule-like protein Dscam2 aug3.g16574,aug3.g21733 LOC107452407 0
LOC122271574 Ptep1.0/2.0 NW_024970946.1 151013 165499 - Down syndrome cell adhesion molecule-like protein Dscam2 aug3.g21733 NA 0
LOC122271859 Ptep1.0/2.0 NW_024971232.1 123812 127270 + Down syndrome cell adhesion molecule-like protein Dscam2 aug3.g21733 NA 0
LOC122272271 Ptep1.0/2.0 NW_024971714.1 4338 55733 - DNA mismatch repair protein Msh6-like aug3.g2173 LOC107448365 0
LOC107436918 Ptep1.0/2.0 NW_024972270.1 21330 25305 - uncharacterized LOC107436918 aug3.g11925,aug3.g21731,aug3.g21687,aug3.g8607,aug3.g22243 LOC107436918 0
LOC107452424 Ptep1.0/2.0 NW_024972973.1 1638 16597 + importin subunit alpha-1 aug3.g21739 LOC107452424 0
LOC122268454 Ptep1.0/2.0 NW_024975970.1 792 3473 - uncharacterized LOC122268454 aug3.g21739 LOC107452424 2e-50
16 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02