Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448945 Ptep1.0/2.0 NW_024969736.1 1430418 1445957 + uncharacterized LOC107448945 aug3.g23674,aug3.g10187 LOC107448945 1e-17
LOC107452803 Ptep1.0/2.0 NW_024970139.1 8914 26654 + putative L-aspartate dehydrogenase aug3.g23671 LOC107452803 0
LOC107452841 Ptep1.0/2.0 NW_024970139.1 31451 46242 + pyrroline-5-carboxylate reductase 2-like aug3.g23672 LOC107452841 0
LOC122270323 Ptep1.0/2.0 NW_024970139.1 53048 57479 + pyrroline-5-carboxylate reductase 2-like aug3.g23672 LOC107452841 0
LOC107452833 Ptep1.0/2.0 NW_024970139.1 68443 109796 + pyrroline-5-carboxylate reductase 2 aug3.g23673 LOC107452833 0
LOC107452832 Ptep1.0/2.0 NW_024970139.1 112323 151658 - thimet oligopeptidase aug3.g23674 LOC107452832 0
LOC107452829 Ptep1.0/2.0 NW_024970139.1 161538 162306 - cytochrome c oxidase subunit 4 isoform 1, mitochondrial aug3.g23675 LOC107452829 0
LOC107452828 Ptep1.0/2.0 NW_024970139.1 162336 168449 + transmembrane protein 222 aug3.g23676 LOC107452828 0
LOC107452826 Ptep1.0/2.0 NW_024970139.1 168076 187000 - probable tubulin polyglutamylase ttll-15 aug3.g23677 LOC107452826 0
LOC107452816 Ptep1.0/2.0 NW_024970139.1 193341 263903 - apoptosis-resistant E3 ubiquitin protein ligase 1 aug3.g23678 LOC107452816 0
LOC107452817 Ptep1.0/2.0 NW_024970139.1 263908 270047 + RNA-binding protein Rsf1 aug3.g23679 LOC107452817 0
LOC107448711 Ptep1.0/2.0 NW_024970434.1 262841 267813 + uncharacterized LOC107448711 aug3.g2367 LOC107448711 0
LOC107452582 Ptep1.0/2.0 NW_024971230.1 2406 27720 - putative L-aspartate dehydrogenase aug3.g21768,aug3.g23671 LOC107452582 0
LOC122272833 Ptep1.0/2.0 NW_024972988.1 4590 5087 + uncharacterized LOC122272833 aug3.g21195,aug3.g18030,aug3.g1775,aug3.g3151,aug3.g18048,aug3.g11229,aug3.g13917,aug3.g23670,aug3.g101,aug3.g5304,aug3.g2007,aug3.g4720,aug3.g1160,aug3.g18760,aug3.g4669 NA 0
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02