Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107454045 Ptep1.0/2.0 NW_024969902.1 77400 195951 + ecdysone receptor aug3.g23949 LOC107454045 0
LOC107454055 Ptep1.0/2.0 NW_024969902.1 212923 222997 - BTB/POZ domain-containing protein At2g30600 aug3.g23948,aug3.g23925,aug3.g15988 LOC107454055 0
LOC107454054 Ptep1.0/2.0 NW_024969902.1 230465 246842 + nucleolar protein 16 aug3.g23947 LOC107454054 0
LOC107454048 Ptep1.0/2.0 NW_024969902.1 255141 293299 - tubulin polyglutamylase TTLL4 aug3.g23946 LOC107454048 0
LOC107454053 Ptep1.0/2.0 NW_024969902.1 304637 319914 - RISC-loading complex subunit tarbp2 aug3.g23945 LOC107454053 0
LOC107454047 Ptep1.0/2.0 NW_024969902.1 400565 746437 + voltage-dependent T-type calcium channel subunit alpha-1H aug3.g23939,aug3.g23944 LOC107454047 0
LOC107448763 Ptep1.0/2.0 NW_024970002.1 314365 531580 + SLIT-ROBO Rho GTPase-activating protein 1 aug3.g2394 LOC107448763 0
LOC110283028 Ptep1.0/2.0 NW_024970462.1 249817 259757 - BTB/POZ domain-containing protein At2g30600 aug3.g23948 LOC110283028 0
LOC122271479 Ptep1.0/2.0 NW_024970857.1 251393 251713 - uncharacterized LOC122271479 aug3.g23943 NA 5e-157
LOC122273693 Ptep1.0/2.0 NW_024978629.1 4 3021 + SLIT-ROBO Rho GTPase-activating protein 1-like aug3.g2394 NA 0
LOC122273953 Ptep1.0/2.0 NW_024984657.1 870 2114 - ecdysone receptor-like aug3.g23949 NA 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02