Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122270464 Ptep1.0/2.0 NW_024969626.1 867686 871552 + uncharacterized LOC122270464 aug3.g24006,aug3.g19075 NA 0
LOC122268996 Ptep1.0/2.0 NW_024969714.1 218429 221317 + uncharacterized LOC122268996 aug3.g24006 NA 0
LOC107457550 Ptep1.0/2.0 NW_024969820.1 45188 61647 - uncharacterized LOC107457550 aug3.g15563,aug3.g4467,aug3.g9391,aug3.g17467,aug3.g24006 LOC107457550 0
LOC107454267 Ptep1.0/2.0 NW_024969889.1 246382 264224 + uncharacterized LOC107454267 aug3.g24000 LOC107454267 0
LOC107454280 Ptep1.0/2.0 NW_024969889.1 283537 291967 + SPRY domain-containing SOCS box protein 3 aug3.g24001 LOC107454280 0
LOC107454273 Ptep1.0/2.0 NW_024969889.1 294683 314123 - eukaryotic translation initiation factor 3 subunit H aug3.g24002 LOC107454273 0
LOC107454274 Ptep1.0/2.0 NW_024969889.1 314312 336018 + uncharacterized LOC107454274 aug3.g24003 LOC107454274 0
LOC107454275 Ptep1.0/2.0 NW_024969889.1 593567 679750 + transcription factor SOX-4-like aug3.g24008,aug3.g16006 LOC107454275 0
LOC122270031 Ptep1.0/2.0 NW_024970022.1 254254 255036 + uncharacterized LOC122270031 aug3.g24006 NA 0
LOC122270438 Ptep1.0/2.0 NW_024970185.1 326040 327799 + trichohyalin-like aug3.g4780,aug3.g24009 NA 0
LOC122270544 Ptep1.0/2.0 NW_024970232.1 462508 463476 - uncharacterized LOC122270544 aug3.g24006 NA 0
LOC122271022 Ptep1.0/2.0 NW_024970517.1 70160 85522 + uncharacterized LOC122271022 aug3.g24006 NA 0
LOC110282416 Ptep1.0/2.0 NW_024970643.1 265521 267026 + uncharacterized LOC110282416 aug3.g24006,aug3.g19394,aug3.g23589 LOC110282416 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02