Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269812 Ptep1.0/2.0 NW_024969941.1 355992 357902 - uncharacterized LOC122269812 aug3.g16123,aug3.g24142,aug3.g27812,aug3.g18507 NA 0
LOC107453969 Ptep1.0/2.0 NW_024969996.1 1270503 1272039 + uncharacterized LOC107453969 aug3.g5917,aug3.g24146 LOC107453969 0
LOC122270123 Ptep1.0/2.0 NW_024970062.1 1350308 1350823 - uncharacterized LOC122270123 aug3.g322,aug3.g24982,aug3.g21347,aug3.g19154,aug3.g18410,aug3.g9789,aug3.g24140,aug3.g5789,aug3.g9585,aug3.g17955,aug3.g10075,aug3.g27721,aug3.g23282,aug3.g20842,aug3.g585,aug3.g19946,aug3.g25069 NA 0
LOC107448788 Ptep1.0/2.0 NW_024970148.1 124599 283805 + uncharacterized LOC107448788 aug3.g2414,aug3.g2415 LOC107448788 0
LOC107454880 Ptep1.0/2.0 NW_024970455.1 272599 362491 + hemicentin-2 aug3.g24148 LOC107454880 0
LOC107454873 Ptep1.0/2.0 NW_024970455.1 443356 443847 - uncharacterized LOC107454873 aug3.g24145 LOC107454873 0
LOC107445610 Ptep1.0/2.0 NW_024977054.1 2639 3595 - uncharacterized LOC107445610 aug3.g18638,aug3.g24144 LOC107445610 0
LOC122273565 Ptep1.0/2.0 NW_024977243.1 2875 3880 - uncharacterized LOC122273565 aug3.g24143 NA 4e-111
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02